Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1681 ATGTATTATCAGCTAGCGAGGTCTTCTTGCAAGGATTCTCTGAAGGTCCTGGAAGAAGATGTACAGCGCGCCAATGCTTTGGCTGCTGCAATTCCAAGAGCCAAACATGGTTCCTATCTTCAAATGAAGTTGGTTTACAATCAATTGGCTCCTTTCTTTCTGTTTTTGATGCAATGGCTGGATTGTTCATGCACTTGTATACTTCCCAGATACCTAAATTTCTTCCACATACTTGTTTACAAGGTTTACACTGATGGAAGACCTAATATATCAGCACATGGAAGAAAGGCAACTGTCAAGGATTTTTATGCTGTCATATTGCCATCCCTTCAACGGCTCCAAGCGAACGCCGAGGAGTTTGACAATGCTAAAGAGAAGTGTGTCAAGTCCGATAAGTCTAGTGAGAGAAGAGTCCAAGGAGATGGAAAACTCTCCAATGGTGATTTGGAGAGAGAAGATGAGTGTGGGATTTGCTTAGAACCTTCAACAAAAATGGTGTTGCCAAACTGCTGCCATTCCATGTGCATTAAATGTTACCACAATTGGAACACGAGATCGGAATCGTGCCCGTTTTGCCGAGGAAGCTTGAAGAGGATCAAATCAGAGGACTTATGGGTGCTAACTTGCAATGAGGATGTGGTTGATGCTGAAAAGCCCAACTCTGAAAGGCATTTTCACCAGGCTTTAAGCTGCCATGGCTATCCCAATGGAGCTATGGAGGGGCAATTTCCATATATAGTAAAGACTACAAAAGTACAAAAAGTGGCTGGAGCTGGTAGCCTAAGGCTATATAGGCCTTTGCCTTTGCCTTTGTCATTGATAGCTGATGATGGGGGAGAAAGCTCCATCCTCATGGAAAATGGCTTCTCTTCTCCCCGAAGTGATGCGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGCTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGTGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTCGACGGAGAAACGAGCAGAGTAATGAAAGGGGTTCAACATGGTGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCATCCACATCCTAAGAAATGTGGCAGATAGGTATGATGATAGCCAGTTCCTTAGAGGAGAGGAACTATTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCAACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATACTTGATCTGATGAATGTCCCATGGCTAACTAGGGAAAATGTAGCAAGCCACTTGCAGAAATATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGAATGAAACATACAGATTCGTGTTCGAAGGATGGAGATGGAAACTTTGGCCTTCGTAGCTCATTAGCCGTGCCACAAAATGATGTCACAAATAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTGCTACAGAATGTTGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGGTTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTGCTAGGAGTGTTCCTGAACCGATAAAGTCCAGGTGTACTCAGATGAAATTCAACAACTCTATTCACTCTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGACCCAAGCAACCGAAGCTGTTATCCTTGGGTTGAAGCTCCAGAAATCAAGTTCAAACAAGAAAGCAAGCCACTTGTGCATTTAGAAGGAGATTTCAATCAGTTCCCTCCAACGGTTCCACCACACCAAGTTCAAATGGACCCACTACAATCAATTTCGTCCATTAGTTCTGGACGATCAGCAACGGAGAAAGATATAGCAAACTCCATTGAAAGTAAGCCTCCATATTCTGAGGACTGTAGCCAACAAATGGTCCATTTAAATCTACCGAAAACTCCAACTGATTCATTTTCTGGCAAGGCTAAGAGTTTCAATGAGATGAATGACCATTTTGATCCCAATTCAACTACTACTGCTCCAATGGGCAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGATTTGCAGGGCTATTTACTTCAAGATGGCTGCTATCCAAAGGACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTATGATTATTCCTACGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 2607 42.27 MYYQLARSSCKDSLKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNQLAPFFLFLMQWLDCSCTCILPRYLNFFHILVYKVYTDGRPNISAHGRKATVKDFYAVILPSLQRLQANAEEFDNAKEKCVKSDKSSERRVQGDGKLSNGDLEREDECGICLEPSTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKPNSERHFHQALSCHGYPNGAMEGQFPYIVKTTKVQKVAGAGSLRLYRPLPLPLSLIADDGGESSILMENGFSSPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSKDGDGNFGLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRVVQEHTSEPKRAAARSVPEPIKSRCTQMKFNNSIHSVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPLVHLEGDFNQFPPTVPPHQVQMDPLQSISSISSGRSATEKDIANSIESKPPYSEDCSQQMVHLNLPKTPTDSFSGKAKSFNEMNDHFDPNSTTTAPMGKNQNFNLSCISTDLGSGLPFATIDEDLQGYLLQDGCYPKDLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28379405 28391222 - CmPI595203_08g016810.1 Cmu08g1681 423167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1681 868 Coils Coil 110 130 - -
Cmu08g1681 868 ProSiteProfiles Response regulatory domain profile. 302 417 IPR001789 GO:0000160(InterPro)
Cmu08g1681 868 SMART ring_2 155 192 IPR001841 -
Cmu08g1681 868 SUPERFAMILY CheY-like 300 425 IPR011006 -
Cmu08g1681 868 FunFam Two-component response regulator 478 541 - -
Cmu08g1681 868 SMART REC_2 301 413 IPR001789 GO:0000160(InterPro)
Cmu08g1681 868 Gene3D - 478 541 - -
Cmu08g1681 868 CDD REC_typeB_ARR-like 303 417 - -
Cmu08g1681 868 FunFam RING/U-box superfamily protein 136 202 - -
Cmu08g1681 868 FunFam Two-component response regulator 301 456 - -
Cmu08g1681 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 203 IPR013083 -
Cmu08g1681 868 ProSiteProfiles Zinc finger RING-type profile. 155 193 IPR001841 -
Cmu08g1681 868 Pfam Response regulator receiver domain 303 411 IPR001789 GO:0000160(InterPro)
Cmu08g1681 868 SUPERFAMILY RING/U-box 148 199 - -
Cmu08g1681 868 Pfam Zinc finger, C3HC4 type (RING finger) 152 198 - -
Cmu08g1681 868 Pfam Myb-like DNA-binding domain 484 534 IPR001005 -
Cmu08g1681 868 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Cmu08g1681 868 NCBIfam myb-like DNA-binding domain, SHAQKYF class 482 535 IPR006447 GO:0003677(InterPro)
Cmu08g1681 868 SUPERFAMILY Homeodomain-like 480 539 IPR009057 -
Cmu08g1681 868 Gene3D - 301 453 - -
Cmu08g1681 868 PANTHER TWO-COMPONENT RESPONSE REGULATOR 295 616 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0949 Cmu-Chr3:4128863 Cmu08g1681 Cmu-Chr8:28379405 5.20E-66 dispersed
Cmu08g1681 Cmu-Chr8:28379405 Cmu11g0338 Cmu-Chr11:3883216 7.50E-64 dispersed
Cmu01g0009 Cmu-Chr1:98951 Cmu08g1681 Cmu-Chr8:28379405 3.50E-19 transposed
Cmu05g2668 Cmu-Chr5:35215834 Cmu08g1681 Cmu-Chr8:28379405 5.20E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6749 PF00072 Response_reg 2.20E-24 CL0304 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1681 K14491 - csv:101204370 1119.38