Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1687 ATGTGGTCTGTTTCATCTTCTCCAGTAGCCGATCCTGAAGTAGTTGTCCAAGAAGTTCTAACGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTGTCCTGCGGAACCGGGAACCCAATAGACGACTGTTGGCGGTGTGATCCCAATTGGGAGAAGAACCGAAAGCGGCTAGCCGACTGCGCCATTGGGTTCGGGAAGAGAGCCATCGGTGGCAAAAACGGCAAATTCTACATTGTCACTGACCCCTCCGATAAGGACGTGGTGAACCCAAAACCAGGCACTCTCCGCCACGCCGTAATCCAAAAGGAACCCTTATGGATCATCTTCAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGTCGCGGCGCGTCCGTCCACATTGCCGGTGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGATTGCAAGCAAGGTGGGAACACGTACGTCAGAGACTCGCCGGAGCATTACGGTTGGAGGACTTTGTCGGACGGCGACGGGGTTTCCATATTTGGGGGCAGCCATATTTGGGTGGACCATTGCTCTTTGTCCAATTGTCGAGATGGGCTAATTGATGCGATTCATGGGTCGACGGCTATCACTCTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACATAGTGATTCCTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGTCTTGTACAAAGAATGCCACGATGCCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGGAATAGATACCTTGCTCCCGATAACCGAGATAGAAAAGAGGTGACAAAAAGAGAGGATGCACCGCAAAGCAAATGGAAGAATTGGAATTGGAGATCCGATGGAGATTTAATGTTGAATGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCGAGAGCATCGAGTTTGAGTGCGAAATCGTCGTCTCTAGTTAGTTCGATGACGGCAAAAGCGGGGGTGCTTTCCTGCCGAAAAGGCTCCCGGTGTTAG 1170 47.86 MWSVSSSPVADPEVVVQEVLTSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAIGGKNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSMTAKAGVLSCRKGSRC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28428660 28430766 + CmPI595203_08g016870.1 Cmu08g1687 423173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1687 389 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Cmu08g1687 389 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Cmu08g1687 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Cmu08g1687 389 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Cmu08g1687 389 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Cmu08g1687 389 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Cmu08g1687 389 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Cmu08g1687 389 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cmu08g1687 389 PANTHER PECTATE LYASE 18-RELATED 26 386 IPR045032 GO:0030570(InterPro)
Cmu08g1687 389 Pfam Pectate lyase 127 304 IPR002022 -
Cmu08g1687 389 SUPERFAMILY Pectin lyase-like 21 383 IPR011050 -
Cmu08g1687 389 FunFam Pectate lyase 40 382 - -
Cmu08g1687 389 Gene3D - 40 382 IPR012334 -
Cmu08g1687 389 SMART amb_all 115 312 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0940 Cmu-Chr3:4044022 Cmu08g1687 Cmu-Chr8:28428660 7.90E-189 dispersed
Cmu05g2509 Cmu-Chr5:33950432 Cmu08g1687 Cmu-Chr8:28428660 4.20E-132 dispersed
Cmu07g0223 Cmu-Chr7:2223283 Cmu08g1687 Cmu-Chr8:28428660 6.00E-171 dispersed
Cmu08g1687 Cmu-Chr8:28428660 Cmu09g1873 Cmu-Chr9:34862403 2.20E-185 dispersed
Cmu08g1687 Cmu-Chr8:28428660 Cmu05g0385 Cmu-Chr5:3284639 5.70E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1687 K01728 - csv:101208076 724.161