Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1713 ATGCCCAACATCAGCCATCCAATTAGCTTCAGAATCGGAATAAGGGAGGTGACGATGAGGACTGGATCACCACTTGGATTGTTCATTTTCATCACCGCTCTTCTCTTACTTCAATTATCCACAGTGGCAGACCCCAGATCCCGGACCGTCAAGATACTATGTTCAACCGTGCTAGAGCACAATACAACCGCCTTTGTGCCCAATTTCGTGGCCACGATGCAAATAATCAGCGACCAAATGCGAACCGGTGGGTTTGGAGTCGCAGTTGTGGGTAAAGGCCCGGACGCCAACTACGGCCTTGCTCAATGTTACGGAGATTTGTCGCTGATGGACTGTGTGTTGTGTTATGCGGAAGCCCGTACTGTCCTTCCTCAATGCTTCCCTTTCAACGGCGGCCGGATTTTCCTGGATGGCTGCTTCATGAGGGCTGAGAACTACAGCTTTTATGACGAATTTTCGGGGCCTCTTGACAGGGCTGTGTGCGGTAACAATTCCATCACCAACTCCCTTTTTGAACAGTCGGCCAGGCAGGCTGTGGCCCGAGCAACCCAAACTGCACCCAACAATGGAGGGTTTGCCAGAATTCAAGTGGCTCCCCCTGGAACCCCCAATGCCTCCGTTTACCTGTTGGCTCAGTGCTGGAGGAATTTGAATCGCACCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCTTGAAATGCTTGCCTCGATCCGAAGCAAGAGCCCTCAACACAGGTTGCTTCATGAGATACTCTAACCTTGACTTCTTAAATGCCGAAGCTTCAGCTTCAAGGTCAAGGGGTACTATTATAGAAATTGTAGTCTCCCTGGTGAGTTCTGTTGCTGTTTTAGTCGTTGGAGTGTTGATTGGAATCTACATCTGGAATAACAGATATGTAAAGAAGAAGCGAAGAGGTTCAAACGATGCAAACAAGATGGCAAAAACACTAAACAATAGTAGCTTGAATTTCAAATACTCTACCCTTGAAAAGGCAACAGGATCTTTTGCTGAGGCTAACAAGCTTGGACAAGGAGGATTTGGCACTGTTTATAAGGCAATTCTGTCGGACGGAAGAGAGATAGCTGTGAAGAGGCTTTTCTTCAACAACAAACATAGAGCAGCAGACTTTTACAATGAAGTAAACATAATCAGTAGTGTGGAGCACAAAAACTTAGTACGGTTGCTCGGTTGTAGTTGTTCTGGACCTGAAAGTTTGCTCGTCTATGAATACCTTGCCAACAAGAGTCTCGACCGCTTCATTTTCGATCGAGATAGAGGTAAATCGCTCAATTGGGAGAAGAGATTTGATATCATTGTGGGAACAGTTGAAGGTTTGGCTTACCTTCATGAGAACTCAAAAACCAAGATCATACACAGAGACATCAAGGCTAGTAACATCCTGCTAGACTCCAAGCTTCGAGCTAAAATAGCTGATTTTGGATTAGCTAGATCCTTTGAAGAAGATGAGAGTCACATCAGCACGGCCATTGCTGGAACCTTGGGATACATGGCGCCAGAGTATTTAGCTCATGGGCAGCTAACAGAAAAGGCAGATGTGTACAGTTTTGGTGTGGTTTTGCTGGAGACCGTGACCGGCATACAAAACAGTAGAAGCAAAACCTCTGACTACTTGGAAAGCATAGTACTAATTGCATGGAAGCACTTTCAATCGGGGACAGTGGAAAGGATACTGGATCCGAACCTTATGGTTGAGGAAGATGGGAGCATAAAAGAGGAGATATTGAGAGTGGTGCAGATAGGGCTTCTTTGCACACAGGAGACTGCATCTCTGCGACCCACAATGTCCAAGGTACTGCAGATGCTGATGAAGAAGGAAGAGGAACTTCCGGCGCCGACCAACCCACCGTTCATGGACGAGAGGACAATGGAATTAAACGACACCAGTGGCACTGAGGATCCATCATGCTTCAACCTCACGAAAGCTTCTTCCTCAGCGGCCACCGTGACCCATAGTTCATTTCATCCCAGAACCCCGGATTCCATGGCGATCCAGCTTGTTTATGCTTCCAAATATGTCCTATTTTCAATCATCACTATTCTTCTGCTGCTCCCAACTTCGACTCTGGGGAAGCCAAGAGATCAAACTGTGAGAGTCATCTGCGGGAAAGAACTGGAGCACAACACCACCGCCTACGTCCCAAACTTTTTTGGTTCCATGGAAAAAGTTAGACAACAAATCGAAACTTCAGGATTTGGAACCGCCGGTACAGGAATAGGACCTGATGCCAGCTATGGGCTTGCCCAATGCCATGGAGATCTCTCACCCCTTGAATGTGTGCTGTGTCATTCTCAAGCACGTACAATGCTCCCCCAATGCTTCCCTTTCAATGGCGGCCGAGCTTTCATTGATGGCTGCTTCCTGAGGTTCGAAAACTATACCTTTTTCGACGAATACAAAGGACCTGAAGACACTGCAGTTTGTGGGAACTTCACCCAAAATGACCCCAACTATAGACAAGCAGTCAAGGAGGCAGTGATGCAAGTGGTTAACGGTGCACCAGACAACAGAGGCTTTGCAAAAGCTCGAATGGCTGTGGCTGGGATGGCAAATGAGTCCGCCGCTTATGCTCTGGGTCAGTGCTGGAGAAGTTTGAACCGCAGCTCTTGCAGTTCATGTTTGTTAATTGCTTCTGCTTCAATGTTGCGATGTTTACCTCAATCTGAAGGACGAGCACTGAACACAGGCTGCTTCATGAGATATTCAAATACAGACTTCCTCAACAAGGACATCAAAAATAGTTCCAGAGGTGGCACAAGAACTGAATTGATAGTTTCAGTTTTGAGTTCTGTTGTTGTTTTGATAGTTGGCCTGGCGATTGGAGCTTATATCTGGAAGCGCAGACATATACAAAAGAAAAGGAAAGGAGGTTCAACTGATGTGAAGAAGTTTGCAAAAACTCTTCAAGATAGTAACTTGGAATTCAAGTACTCAACCCTTGAAAAAGCTACCAACAATTTCAGCCTTGATAACAAGATTGGACAGGGCGGGTTTGGCTCTGTTTATAAGGGAACTCTATCCGATGGAAGAGAAATTGCTGTGAAGAGATTCTTCTTTGATAACAGACATAGAGCAGCAGATTTCTACAATGAAGTAAACATGATCAGCATTGTCGAACATAAAAATCTGGTAAGATTACTTGGATGCAGTTGTTCTGGACCTGAAAGCCTTCTTGTTTATGAATTCCTACCAAACAAGAGTCTCGATCGCTTCATTTTCGATACCAGTAGCAGTAAAGCTCTTGATTGGGATAAGAGATACAACATCATCACTGGAACGGTTGAAGGTTTAATATATCTACACGAAAATCCAAAGATCAAAATCATACACAGGGATATAAAGGCGAGTAATATCTTGCTGGATCTAAAGCTTCAAGCGAAAATAGCAGATTTTGGATTAGCAAGGTCTTTCCAAGAAAGCAAGAGCCATATTAGCACGGCTGTTGCAGGAACCCTAGGATATATGGCTCCGGAGTATCTAGCTTATGGCCAGTTATCAGAAAAGGCCGACGTCTACAGCTTTGGAGTGCTTTTGTTAGAAATTGTTACAGGATTACAATATAGTGGCATTCAAGTCTCCGGCAACATTGAAAGTCTGATCACTGCTATGTGGAGACATTTCCAAGCAGGCACAGTTGAGAGATTATTTGATCCAAATCTCAATCTTCAGAATCACTATAACAAGAAAGTGAAGGATGAGGTAAAGAGAGTGGTGCACATAGGGCTCTTATGCATCCAGGAGATTCCATCTCTACGACCAACAATGTCGAAGGTTCTACGAATGCTGACCATGGAGGAAGAGCATCTTCCTCCACCCACCAAACCACCCTTCATGGATGAGATGACCATGGAACTTGATGATTCATGCAAGTACTCACGATGTTATTCTAATACGGAGGGATCTTCTTCTACTGCCACAGTCGGCCATAGTTCTTTCCATCCCAGATAA 3975 45.21 MPNISHPISFRIGIREVTMRTGSPLGLFIFITALLLLQLSTVADPRSRTVKILCSTVLEHNTTAFVPNFVATMQIISDQMRTGGFGVAVVGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYDEFSGPLDRAVCGNNSITNSLFEQSARQAVARATQTAPNNGGFARIQVAPPGTPNASVYLLAQCWRNLNRTSCTSCLQNASASILKCLPRSEARALNTGCFMRYSNLDFLNAEASASRSRGTIIEIVVSLVSSVAVLVVGVLIGIYIWNNRYVKKKRRGSNDANKMAKTLNNSSLNFKYSTLEKATGSFAEANKLGQGGFGTVYKAILSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLANKSLDRFIFDRDRGKSLNWEKRFDIIVGTVEGLAYLHENSKTKIIHRDIKASNILLDSKLRAKIADFGLARSFEEDESHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVVLLETVTGIQNSRSKTSDYLESIVLIAWKHFQSGTVERILDPNLMVEEDGSIKEEILRVVQIGLLCTQETASLRPTMSKVLQMLMKKEEELPAPTNPPFMDERTMELNDTSGTEDPSCFNLTKASSSAATVTHSSFHPRTPDSMAIQLVYASKYVLFSIITILLLLPTSTLGKPRDQTVRVICGKELEHNTTAYVPNFFGSMEKVRQQIETSGFGTAGTGIGPDASYGLAQCHGDLSPLECVLCHSQARTMLPQCFPFNGGRAFIDGCFLRFENYTFFDEYKGPEDTAVCGNFTQNDPNYRQAVKEAVMQVVNGAPDNRGFAKARMAVAGMANESAAYALGQCWRSLNRSSCSSCLLIASASMLRCLPQSEGRALNTGCFMRYSNTDFLNKDIKNSSRGGTRTELIVSVLSSVVVLIVGLAIGAYIWKRRHIQKKRKGGSTDVKKFAKTLQDSNLEFKYSTLEKATNNFSLDNKIGQGGFGSVYKGTLSDGREIAVKRFFFDNRHRAADFYNEVNMISIVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDTSSSKALDWDKRYNIITGTVEGLIYLHENPKIKIIHRDIKASNILLDLKLQAKIADFGLARSFQESKSHISTAVAGTLGYMAPEYLAYGQLSEKADVYSFGVLLLEIVTGLQYSGIQVSGNIESLITAMWRHFQAGTVERLFDPNLNLQNHYNKKVKDEVKRVVHIGLLCIQEIPSLRPTMSKVLRMLTMEEEHLPPPTKPPFMDEMTMELDDSCKYSRCYSNTEGSSSTATVGHSSFHPR 1324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28587755 28594205 + CmPI595203_08g017130.1 Cmu08g1713 423199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1713 1324 Pfam Protein kinase domain 997 1269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g1713 1324 Pfam Protein kinase domain 340 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g1713 1324 FunFam Cysteine-rich receptor-like protein kinase 3 157 258 - -
Cmu08g1713 1324 FunFam Cysteine-rich receptor-like protein kinase 2 1072 1279 - -
Cmu08g1713 1324 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Cmu08g1713 1324 ProSiteProfiles Gnk2-homologous domain profile. 153 258 IPR002902 -
Cmu08g1713 1324 SUPERFAMILY Protein kinase-like (PK-like) 980 1297 IPR011009 -
Cmu08g1713 1324 ProSiteProfiles Gnk2-homologous domain profile. 47 148 IPR002902 -
Cmu08g1713 1324 Gene3D Phosphorylase Kinase; domain 1 298 413 - -
Cmu08g1713 1324 Gene3D Phosphorylase Kinase; domain 1 956 1071 - -
Cmu08g1713 1324 CDD STKc_IRAK 1002 1272 - -
Cmu08g1713 1324 ProSitePatterns Protein kinases ATP-binding region signature. 1002 1024 IPR017441 GO:0005524(InterPro)
Cmu08g1713 1324 ProSiteProfiles Gnk2-homologous domain profile. 703 804 IPR002902 -
Cmu08g1713 1324 CDD STKc_IRAK 344 613 - -
Cmu08g1713 1324 FunFam Putative DUF26-domain receptor-like protein kinase family protein 966 1071 - -
Cmu08g1713 1324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g1713 1324 FunFam Cysteine-rich receptor-like protein kinase 2 703 804 - -
Cmu08g1713 1324 SMART serkin_6 996 1273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g1713 1324 SMART serkin_6 338 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g1713 1324 ProSiteProfiles Protein kinase domain profile. 996 1287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g1713 1324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1117 1129 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g1713 1324 Gene3D Transferase(Phosphotransferase) domain 1 414 623 - -
Cmu08g1713 1324 Gene3D Transferase(Phosphotransferase) domain 1 1072 1279 - -
Cmu08g1713 1324 FunFam Cysteine-rich receptor-like protein kinase 3 813 915 - -
Cmu08g1713 1324 FunFam Cysteine-rich receptor-like protein kinase 2 47 148 - -
Cmu08g1713 1324 FunFam Putative DUF26-domain receptor-like protein kinase family protein 307 413 - -
Cmu08g1713 1324 Pfam Salt stress response/antifungal 61 146 IPR002902 -
Cmu08g1713 1324 Pfam Salt stress response/antifungal 817 912 IPR002902 -
Cmu08g1713 1324 Pfam Salt stress response/antifungal 717 802 IPR002902 -
Cmu08g1713 1324 Pfam Salt stress response/antifungal 161 255 IPR002902 -
Cmu08g1713 1324 ProSiteProfiles Gnk2-homologous domain profile. 808 915 IPR002902 -
Cmu08g1713 1324 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 183 642 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cmu08g1713 1324 SUPERFAMILY Protein kinase-like (PK-like) 323 632 IPR011009 -
Cmu08g1713 1324 Gene3D - 814 915 IPR038408 -
Cmu08g1713 1324 Gene3D - 47 148 IPR038408 -
Cmu08g1713 1324 Gene3D - 157 258 IPR038408 -
Cmu08g1713 1324 Gene3D - 704 804 IPR038408 -
Cmu08g1713 1324 FunFam Cysteine-rich receptor-like protein kinase 2 414 619 - -
Cmu08g1713 1324 ProSiteProfiles Protein kinase domain profile. 338 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1713 Cmu-Chr8:28587755 Cmu10g2160 Cmu-Chr10:27639042 3.50E-129 dispersed
Cmu05g1069 Cmu-Chr5:10064083 Cmu08g1713 Cmu-Chr8:28587755 5.80E-69 transposed
Cmu06g0227 Cmu-Chr6:2477964 Cmu08g1713 Cmu-Chr8:28587755 1.90E-24 transposed
Cmu05g2600 Cmu-Chr5:34680157 Cmu08g1713 Cmu-Chr8:28587755 1.30E-129 wgd
Cmu06g1765 Cmu-Chr6:28681434 Cmu08g1713 Cmu-Chr8:28587755 8.50E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75752 PF00069 Pkinase 2.30E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1713 - - - 0.0