Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1715 ATGCTACTAAGTATACGAAAGATGGCGGTACTTAAACACGGTTCAGAGAACCATCATGGGTTGCGGTTTAGGACCCCGATTATGTATCAATATCAGCGTAAGGGTAAAAAGGGGAATTTGCATGTTGGGGAGGGGACTACTGAGATTACGAATGAGGATGCTATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAATTACAAGATGCTCAAATGAGGGTGGAAGACAAAGGTCTTAAAGATATGCTCTTAAGTAGATTTGGCAGCCACATTGGTACCTTGAAGCTGGAATTTTCGAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGTTCGAGTGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCTGATAAGGTTGCGCTGGCAGAGACAACAGGACTAGATCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATATGCAAATATGGATAATGTGGCTGATCAATTTTACGCTAGGCTTGACTCTTGTGAATGA 561 41.71 MLLSIRKMAVLKHGSENHHGLRFRTPIMYQYQRKGKKGNLHVGEGTTEITNEDAMSSDDELNWGERELQDAQMRVEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLFEWWNVHYKWPYPTEADKVALAETTGLDPKQINNWFINQRKRHWKPSESMQYANMDNVADQFYARLDSCE 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28597193 28599651 - CmPI595203_08g017150.1 Cmu08g1715 423201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1715 186 Gene3D - 98 175 - -
Cmu08g1715 186 SUPERFAMILY Homeodomain-like 100 172 IPR009057 -
Cmu08g1715 186 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu08g1715 186 ProSiteProfiles 'Homeobox' domain profile. 99 162 IPR001356 GO:0003677(InterPro)
Cmu08g1715 186 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 25 171 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu08g1715 186 SMART ELK_2 79 100 IPR005539 GO:0003677(InterPro)
Cmu08g1715 186 Pfam ELK domain 80 100 IPR005539 GO:0003677(InterPro)
Cmu08g1715 186 Pfam Homeobox KN domain 119 158 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu08g1715 186 CDD homeodomain 113 163 IPR001356 GO:0003677(InterPro)
Cmu08g1715 186 SMART HOX_1 101 166 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1619 Cmu-Chr8:27880451 Cmu08g1715 Cmu-Chr8:28597193 1.50E-33 dispersed
Cmu05g2599 Cmu-Chr5:34673380 Cmu08g1715 Cmu-Chr8:28597193 1.80E-50 wgd
Cmu06g1753 Cmu-Chr6:28568968 Cmu08g1715 Cmu-Chr8:28597193 1.70E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6751 PF05920 Homeobox_KN 1.90E-17 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1715 - - - 0.0