Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0023 ATGGGGAAAGCTACCAGATGGTTGAAGGGTTTATTGGGGATCAAGAAAGAAAAAGACCCATCTGGGAATTCAAATTCAAATTCAAATTCAACCACCCTCGCCGCCGACAGAAAGGACAAGAAACGCTGGAGTTTTGCAAAGTCCGCTAGAGATTCCGGCCAAACGCCGCCTCCACCGCCGGACACTACTTGGTTCAGATCCTCCTACATTTCTGATTCAGAGAAAGAGCAGAACAAACACGCAATTGCTGTAGCTGCAGCCACCGCCGCCGCCGCAGACGCCGCCGTCGCGGCCGCGCAAGCGGCGGTGGCCGTCGTCCGCCTGACTAGCCAAGGAAGAGGGTCTCTTTATATCACTGGAAGAGATAGATGGGCTGCTGTGAAGATTCAAACAGTTTTTAGGGGCTATTTGGCAAGAAAGGCCCTGCGAGCTCTCAAAGGGCTTGTTAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGGAAAAGAGCTGCTGCTACTCTTCACAGTATGCAAGCTCTTTTTCGAGCTCAAACTGCAGTTAGAACTCAGAGAGCTCGTCGATCTTTCAACAAAGAGAACAGGTTTATCCCCGAGATTCGTCCCCGAAAATCTTCGGAACGCTTTGATGAAACAAGAAGTGAATTATTCCATAGTAAGAGGTTGTCTGTAGCATCATCTTATGACACAACCTGTATGAATTCATTGGATGAGAGTCCCAAAATTGTGGAAATCGACACCTACCGAACTCGATCGAGGTCTCGTAGGTACATTTCGACATTGTCTGAATGCGGAGGAGATGATGTAGCTTTCCAAGCAATCTCTTCATCGCCATTACCTTGTCCGAATCGACCTCGCGTTTGCCACAACAATGTGCTTCAAGACTTCGAATGGTGCTTGATGGGTGAGGACTGCAAGTTCCCTACAGCTCACAGCACGCCCCGGCTATCGAATAACTCGTTCGTCTCTGCCAACGTGCCAGTCACCCCATCCAAGAGCGTGTGCGGGGACAGCTTCTTTAGGCCATACATGAACTACTGCCCCAATTATATGGCGAACACACAATCTTTCAAGGCAAAACTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAGCCAGGGTCCAAGAAGAAGCTATCATTGAATGAAATAATGGCAGCAAGAAACAGCTTGAGCAGTGTAAGAATGCGAAGACCAAATAACCAAATGCTGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGAAGAAGAAGAAGAAACATCATATGGTTTTTGA 1299 47.58 MGKATRWLKGLLGIKKEKDPSGNSNSNSNSTTLAADRKDKKRWSFAKSARDSGQTPPPPPDTTWFRSSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLYITGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAVRTQRARRSFNKENRFIPEIRPRKSSERFDETRSELFHSKRLSVASSYDTTCMNSLDESPKIVEIDTYRTRSRSRRYISTLSECGGDDVAFQAISSSPLPCPNRPRVCHNNVLQDFEWCLMGEDCKFPTAHSTPRLSNNSFVSANVPVTPSKSVCGDSFFRPYMNYCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSVRMRRPNNQMLQEEEEEEEEEDDDDDDDDEEEEETSYGF 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 529912 531683 + CmPI595203_09g000230.1 Cmu09g0023 423252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0023 432 ProSiteProfiles Zinc finger C3H1-type profile. 282 314 IPR000571 GO:0046872(InterPro)
Cmu09g0023 432 MobiDBLite consensus disorder prediction 1 63 - -
Cmu09g0023 432 Gene3D - 75 148 - -
Cmu09g0023 432 Pfam IQ calmodulin-binding motif 123 143 IPR000048 GO:0005515(InterPro)
Cmu09g0023 432 Pfam IQ calmodulin-binding motif 149 163 IPR000048 GO:0005515(InterPro)
Cmu09g0023 432 MobiDBLite consensus disorder prediction 19 33 - -
Cmu09g0023 432 ProSiteProfiles IQ motif profile. 122 150 - -
Cmu09g0023 432 MobiDBLite consensus disorder prediction 405 432 - -
Cmu09g0023 432 MobiDBLite consensus disorder prediction 385 400 - -
Cmu09g0023 432 MobiDBLite consensus disorder prediction 359 432 - -
Cmu09g0023 432 ProSiteProfiles IQ motif profile. 146 173 - -
Cmu09g0023 432 PANTHER IQ-DOMAIN 5-RELATED 6 385 - -
Cmu09g0023 432 SMART iq_5 144 165 IPR000048 GO:0005515(InterPro)
Cmu09g0023 432 SMART iq_5 121 143 IPR000048 GO:0005515(InterPro)
Cmu09g0023 432 Pfam Protein of unknown function (DUF4005) 311 396 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0023 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2201 Cmu-Chr3:30509177 Cmu09g0023 Cmu-Chr9:529912 7.10E-84 dispersed
Cmu09g0023 Cmu-Chr9:529912 Cmu09g1952 Cmu-Chr9:35600847 2.00E-09 dispersed
Cmu07g1313 Cmu-Chr7:28460699 Cmu09g0023 Cmu-Chr9:529912 2.20E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g1952 . 129 607 IQD Protein Family AT3G52290 54.2 2.4e-103 372.9
Cmu05g2144 . 1766 1975 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Cmu03g1772 . 36 443 IQD Protein Family AT3G22190 57.8 9.5e-97 350.9
Cmu05g1839 . 1 438 IQD Protein Family AT2G26180 61.6 3.9e-119 425.2
Cmu01g2294 . 25 298 IQD Protein Family AT2G33990 52.1 7.3e-63 237.7
Cmu07g0985 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cmu01g2294 . 25 246 IQD Protein Family AT3G15050 50.9 1.5e-55 213.4
Cmu07g0985 . 112 285 IQD Protein Family AT3G15050 62.1 3.6e-54 208.8
Cmu01g0729 . 119 471 IQD Protein Family AT5G13460 50.4 8.2e-75 278.1
Cmu06g0268 . 1 509 IQD Protein Family AT4G00820 51.4 7.5e-115 411.4
Cmu06g0268 . 1 509 IQD Protein Family AT1G01110 50.1 2.5e-110 396.4
Cmu09g0023 . 1 399 IQD Protein Family AT3G16490 50.5 1.2e-66 250.8
Cmu03g2201 . 1 391 IQD Protein Family AT3G16490 50.2 5.2e-65 245.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44