Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0024 ATGGGAAATTGTTTGCTCTTAATTCATCCAAGGTTTGACTGCCTCTTCTCTGTTCTCTCTTGTTCTGGAATAATTTTTTTTACTGAATTCCAATGTATTGAACTTGAACCCAGCAGTTTGGTACAGCACCAGTTCGCTGTCACTTTCATGGGGCTGATTCCGCAGTCAGGATACCAGGGTGTAGTCTCGCATTGTGTTAGGAAGCATTTTTGTTACAGCCATAATTCGAGGAAGTCATCAAAAAGGGGGATGGCATTTAGAGGGCGAGGACGAGGACGAGGTGGCGGCGGTGGGGCCTTTCAGTATGCCAAGCAAGAACCCTTTGAGCTTTTTCCAGAGAATGTAACTCTACCGAGCGTCAGTGATATGCCTGAAGAAAGAAGCTTGGCTTTACGTAACAACAAATTTCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTTATGAAAAAGGTGCAAAGAACTGAGATAGAGAAATTTTCCGATAGATCTAAGTCGAATAGTACGTTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACATCCAGGAACTTTCCTGAAGAATTGGTTGAAGATACTCTACTGTTAAATTTTCAGGTTTCAAAGGGAAGTTGCAGACCAAAAGAAAAGTTCAATGGAATCCCGGCTCAGGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGATGAAGATGAAGACGAAGACGATGCACAGTCCGAGGAACTTACTGATGATGATTATTATCAGAATGAATACTTCGACGACGATGAAGATGATTACAACATGGAAGAAGAAGGTGGAGGTATGGTTTTTTACTCTAATGGACTGATTAATATTATGAACCAGAATATTAGCAGAATGGAAATTGGTGGTAAGATTTGGGGCTTGTTTCTCCAACTCAAAGAATTTAATTGGTGTAGGACATTGGATTGTTTGGAAAAAATGTCGTGGCAAACGTACGTGGACGATCACCTGATGTGTGAGATTGAAGGAAACCATCTGACCTCCGCCGCAATCATCGGACACGACGGCAGTGTTTGGGCGCAGAGCTCCTCATTCCCTCAGTTTAAGGCGGAGGAGATATCGGCGATTATGAAGGATTTGGATGAGCCAGGTTCTCTTGCACCAACTGGATTACACCTGGGAGGCACTAAATACATGGTCATCCAAGGAGAGCCTGGATCCGTTGTTCGTGGCAAAAAGGGTGCTGGGGGAATCACTGTGAAGAAAACTGAGAAGGCTGTCATAATTGGGATTTATGATGAACCTTTGACTCCTGGACAATGCAATATGGTGGTTGAAAGGTTGGGAGATTACCTCATCGAACAGGCTTTGTAG 1365 43.22 MGNCLLLIHPRFDCLFSVLSCSGIIFFTEFQCIELEPSSLVQHQFAVTFMGLIPQSGYQGVVSHCVRKHFCYSHNSRKSSKRGMAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEDTLLLNFQVSKGSCRPKEKFNGIPAQGQDKDDKEKKEGEEGEDEDEDEDDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGGGMVFYSNGLINIMNQNISRMEIGGKIWGLFLQLKEFNWCRTLDCLEKMSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSSSFPQFKAEEISAIMKDLDEPGSLAPTGLHLGGTKYMVIQGEPGSVVRGKKGAGGITVKKTEKAVIIGIYDEPLTPGQCNMVVERLGDYLIEQAL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 537058 544092 - CmPI595203_09g000240.1 Cmu09g0024 423253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0024 454 Pfam Profilin 324 452 IPR048278 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Profilin signature 344 353 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Profilin signature 423 436 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Profilin signature 326 335 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Profilin signature 387 401 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Profilin signature 436 453 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Profilin signature 363 383 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 MobiDBLite consensus disorder prediction 233 273 - -
Cmu09g0024 454 SUPERFAMILY Profilin (actin-binding protein) 325 452 IPR036140 -
Cmu09g0024 454 CDD PROF 325 452 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Plant profilin signature 394 403 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Plant profilin signature 427 440 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Plant profilin signature 375 389 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Plant profilin signature 407 422 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Plant profilin signature 440 453 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Plant profilin signature 324 337 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 PRINTS Plant profilin signature 350 363 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 MobiDBLite consensus disorder prediction 211 274 - -
Cmu09g0024 454 PANTHER DNA-DIRECTED RNA POLYMERASE III 84 276 IPR024661 GO:0005666(PANTHER)|GO:0006383(InterPro)
Cmu09g0024 454 SMART prof_2 324 454 IPR005455 GO:0003779(InterPro)
Cmu09g0024 454 Gene3D Dynein light chain 2a, cytoplasmic 322 453 - -
Cmu09g0024 454 FunFam Profilin 324 454 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0024 Cmu-Chr9:537058 Cmu11g0197 Cmu-Chr11:2441575 3.10E-61 dispersed
Cmu11g1503 Cmu-Chr11:27345412 Cmu09g0024 Cmu-Chr9:537058 2.50E-55 transposed
Cmu07g1316 Cmu-Chr7:28482162 Cmu09g0024 Cmu-Chr9:537058 4.10E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0024 K05759 - cit:102614190 243.817