Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0035 ATGGATCATTTGAATTGGAATGGTTATGGATCAAGAGTTGCGACGAAAACGACGACGTCGGCATCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAACTCAAATAATTCCAACTTCTTCAACTCACTTCAAGACTTCCCAATTAAAGAAGCTGCAACTTCTTCAGCTCTGGTTTCAAAAACAGGGGAAGCTTTGGTTATCAGTCCTCCATTGACAAGCTTTACAACATCTAGCAACATGGATGTTGTTGGCCTTGAATCACAGCTCCTCACCGGCTTCAACGGCGACAAATCGGCGACGGTAACGACGTGCTCTCTCGAGTCGTTGGACTGTTTGCTTTCAGCTACAAACAGCAACACAGACACATCAGTTGAAGATGATGGATCAGTTTCAATGATGTTAACAGATTACACCAATTTATGGAACTTCGGAAGAAATGCAGCAGCATCTTCAAGAGAATCTGAAAAGAATGGTTCAAATTCTACAAAGAGAAGCCATGACCAAACTCATTTCAAAGCTGCAGATTACTCTATTTTCTCAAATAACATCATAAATCTATCTGATTCCACTTCAGACAGTGGAGGATTTAGGATCATAACAGATCAGAATCCGCCAAAACAGAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAATTTTCAACAATCATGTTCATCAGGATCTTCTTGTATTGATCAAGAGCCTGATCCAGAGGCCATTGCACAAATGAAAGAGATGATCTACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTGGAAATGATAGAAAAGCCCAAAAGGAAGAATGTGAGAATTTCAACAGACCCACAAACTGTAGCAGCCAGGCAAAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGAAGCAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTAAAGTCTCAGATCAAAGCTTTAGAGAATCTTGGGCAAAAGCTTGAGTCTTTGAATTGCCCTCCAACTAGCATAGCTTTCTCTTTCAACCCATCTTTTCCCATACAAACATCATCATCATCCTCCCATAATAATTTCACGCTCCAAAATCCCAACCACCTTATTAGCCAATATCCCCAAAACTAA 1176 40.82 MDHLNWNGYGSRVATKTTTSASFWSNYQQGVEERFMISNSNNSNFFNSLQDFPIKEAATSSALVSKTGEALVISPPLTSFTTSSNMDVVGLESQLLTGFNGDKSATVTTCSLESLDCLLSATNSNTDTSVEDDGSVSMMLTDYTNLWNFGRNAAASSRESEKNGSNSTKRSHDQTHFKAADYSIFSNNIINLSDSTSDSGGFRIITDQNPPKQKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEMIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPPTSIAFSFNPSFPIQTSSSSSHNNFTLQNPNHLISQYPQN 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 654110 655285 - CmPI595203_09g000350.1 Cmu09g0035 423264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0035 391 Coils Coil 321 348 - -
Cmu09g0035 391 MobiDBLite consensus disorder prediction 154 173 - -
Cmu09g0035 391 Gene3D - 287 350 IPR036638 GO:0046983(InterPro)
Cmu09g0035 391 SMART finulus 288 337 IPR011598 GO:0046983(InterPro)
Cmu09g0035 391 MobiDBLite consensus disorder prediction 220 241 - -
Cmu09g0035 391 FunFam BHLH transcription factor 285 349 - -
Cmu09g0035 391 Pfam Helix-loop-helix DNA-binding domain 291 332 IPR011598 GO:0046983(InterPro)
Cmu09g0035 391 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 115 377 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0035 391 MobiDBLite consensus disorder prediction 368 391 - -
Cmu09g0035 391 MobiDBLite consensus disorder prediction 199 243 - -
Cmu09g0035 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 347 IPR036638 GO:0046983(InterPro)
Cmu09g0035 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0166 Cmu-Chr2:1634495 Cmu09g0035 Cmu-Chr9:654110 4.30E-09 dispersed
Cmu03g1446 Cmu-Chr3:10118963 Cmu09g0035 Cmu-Chr9:654110 1.20E-08 dispersed
Cmu04g0733 Cmu-Chr4:21759887 Cmu09g0035 Cmu-Chr9:654110 1.20E-19 dispersed
Cmu05g2059 Cmu-Chr5:30274809 Cmu09g0035 Cmu-Chr9:654110 1.80E-30 dispersed
Cmu08g1538 Cmu-Chr8:27224156 Cmu09g0035 Cmu-Chr9:654110 1.70E-29 dispersed
Cmu09g0035 Cmu-Chr9:654110 Cmu10g1823 Cmu-Chr10:22880395 1.00E-12 dispersed
Cmu07g1327 Cmu-Chr7:28572543 Cmu09g0035 Cmu-Chr9:654110 3.10E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6756 PF00010 HLH 7.20E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0035 - - - 0.0