Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0066 ATGATGATGAAAGGTAATTTTTTGTCTCAACAACAACAACAAATTGTAGTGATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCCAATAAAACTGAATTCCCCAATCAATATTTTGCTCCACAAACCCAACCACCACCTCCTCCTAAGAAGAAGCGCAACCTCCCCGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAGACGTTGATGGCGACAAATAGATTCGTATGCGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAGATCAAACAAAGAAGTAATAAAGAAGAAGGTATATGTTTGTCCAGAAGTGAGTTGCGTACACCATGATCCATCAAGAGCACTTGGAGACCTAACAGGAATAAAGAAGCACTTCTGCAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGAAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCATTAAACCCTCTTCTCTCTTCTTACAACAACAATAATAATTCACAAGAATTCCTCAACAATAACAATAATAATTTTGCTCTCAAACGAGATTTCAACAATAATAACAGCGGCAGCAACAACAACAATTTGAGAGCGGAGATTCCGCCGTGGCTACAGCCATCGGATCTCCGAGCGGAGATCCTGATGGGAAGTGGGGAGGATGAGAATCCTCATAATAATCATAATCATGAAACCCTAAACCCTAACCCTAATCCGGGGTGCGGGGCCACAAGTGTTCCTCCTCCGGCGTACCAATCGTGTTCTGTTTCTTCTCCTCATATCTCAGCGACTGCACTGCTGCAGAAGGCAGCTCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCCAAGGCCCCACAAGCTTCTTCACGTGTCTACAGGTAATTTTGGGGAAATAGGATTATGGTCACGTGAAGTTGAAATGGGTAGAGGAGGAGGAGGAGGAGGAGGGGCTGTGAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGCTGCTTCTGCTTCTGCTTCTGCTTCTGCACCCACCACTTTTCTTCATGATATGATCAATTCCCTCTCTTCTCCTTCTGCTTCTCATCCTTTCTTCCATGATAATTCCTCTTTCAACGACCCCGCCACTTTCGCCGCTATGCATCATCACACCGCCGCTCCCGCACCCGCCATCAACACCACCACCGCTGCCACTTCCGGCGGTCGTAGCGACGGTTTAACCAGAGATTTCTTGGGACTTCGCCCTCTTTCTCATGGTGATATTCTAAGCCTTACTGGATTTGGAAGTTGCATTGTTCCTAATTCCTCCAATCTTCATTCTCAAATCCAGAAGCCATGGCAGGGTTAG 1578 44.55 MMMKGNFLSQQQQQIVVMDENLSNLTSASGEATASVSSANKTEFPNQYFAPQTQPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNNNSQEFLNNNNNNFALKRDFNNNNSGSNNNNLRAEIPPWLQPSDLRAEILMGSGEDENPHNNHNHETLNPNPNPGCGATSVPPPAYQSCSVSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLLHVSTGNFGEIGLWSREVEMGRGGGGGGGAVSCSSSSCTDYGNKAASASASASAPTTFLHDMINSLSSPSASHPFFHDNSSFNDPATFAAMHHHTAAPAPAINTTTAATSGGRSDGLTRDFLGLRPLSHGDILSLTGFGSCIVPNSSNLHSQIQKPWQG 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 880309 883153 - CmPI595203_09g000660.1 Cmu09g0066 423295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0066 525 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 127 161 - -
Cmu09g0066 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 492 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu09g0066 525 MobiDBLite consensus disorder prediction 46 72 - -
Cmu09g0066 525 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 165 189 - -
Cmu09g0066 525 SMART c2h2final6 166 186 IPR013087 -
Cmu09g0066 525 SMART c2h2final6 131 161 IPR013087 -
Cmu09g0066 525 SMART c2h2final6 89 111 IPR013087 -
Cmu09g0066 525 MobiDBLite consensus disorder prediction 50 64 - -
Cmu09g0066 525 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Cmu09g0066 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Cmu09g0066 525 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Cmu09g0066 525 Gene3D Classic Zinc Finger 68 139 - -
Cmu09g0066 525 SUPERFAMILY beta-beta-alpha zinc fingers 88 186 IPR036236 -
Cmu09g0066 525 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Cmu09g0066 525 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 192 227 - -
Cmu09g0066 525 Gene3D Classic Zinc Finger 144 223 - -
Cmu09g0066 525 FunFam protein indeterminate-domain 12-like 68 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1872 Cmu-Chr1:32295810 Cmu09g0066 Cmu-Chr9:880309 9.70E-88 dispersed
Cmu04g0924 Cmu-Chr4:23713415 Cmu09g0066 Cmu-Chr9:880309 3.10E-87 dispersed
Cmu09g0066 Cmu-Chr9:880309 Cmu10g2759 Cmu-Chr10:34202717 3.80E-87 dispersed
Cmu05g1833 Cmu-Chr5:28402948 Cmu09g0066 Cmu-Chr9:880309 2.70E-88 wgd
Cmu07g1354 Cmu-Chr7:28841961 Cmu09g0066 Cmu-Chr9:880309 1.10E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6758 PF00096 zf-C2H2 0.0053 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0066 K25870 - csv:101220200 715.687