Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu09g0076 | ATGATGGAACAATTCTGGGAACCTCGATCTACGACGGTTCTGGATTCTCAATATCCTTTGATTGTTTTTAGCCACCGTGACCTACGCAGTCCAAGGGTTACACTACAAAAACCTAACAGCCTTCACAAAAACTTCCCTCTTTCGCTCGCTGCGCTTTGCCCAACACTCGCCTCCAACTCCACGGATCAGATCCGAAGAGTTTGGCAAACCCTAGCTTCCTTTCTTCAATCTCCATCTGTTTCATCTTCCTCTTTCTTCTCTAACATTCCGCAGACTACCCCTGTTCTTAGCCCTTCCGTATCCATGGCAGGTTTAGCTCCAGAAGGATCCCAGTTTGATTCTCGCCAATATGATGCTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTCTTTACCTCATATGATGAAGTATATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAATCTCCTTAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTTCAGCAACTTGATTATGGTCTAATCCAGTGTCAGGCATTAGTTCTGGCTCCGACTAGGGAGCTGGCTCAACAAATCGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTCAAGGTTCATGCTTGTGTAGGAGGGACAAGTGTCCGTGAAGATCAACGCATTCTTCAAGCTGGTGTTCATGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATCTATGACATTTTCCAGCTGTTGCCGTCAAAAATTCAAGTTGGGGTATTCTCCGCCACAATGCCACCAGAAGCTTTGGAGATCACGAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTCGATAAGGAAGATTGGAAGCTCGAAACTCTATGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTTATTTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCAGCCACCCATGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGTTCGTCTCGTGTCCTTATCACAACTGACTTGTTAGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTACCAACCCAACCAGAAAATTACCTTCATCGAATTGGCCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAAATGATGATGACAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATCGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA | 1545 | 43.95 | MMEQFWEPRSTTVLDSQYPLIVFSHRDLRSPRVTLQKPNSLHKNFPLSLAALCPTLASNSTDQIRRVWQTLASFLQSPSVSSSSFFSNIPQTTPVLSPSVSMAGLAPEGSQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDDRMLFDIQKFYNVVIEELPANVADLL | 514 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 936001 | 941182 | - | CmPI595203_09g000760.1 | Cmu09g0076 | 423305 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu09g0076 | 514 | Pfam | DEAD/DEAH box helicase | 166 | 328 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Cmu09g0076 | 514 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 172 | 342 | IPR014001 | - | |
Cmu09g0076 | 514 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 288 | 296 | IPR000629 | - | |
Cmu09g0076 | 514 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 210 | 495 | IPR027417 | - | |
Cmu09g0076 | 514 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 136 | 500 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Cmu09g0076 | 514 | SMART | helicmild6 | 394 | 475 | IPR001650 | - | |
Cmu09g0076 | 514 | Pfam | Helicase conserved C-terminal domain | 367 | 475 | IPR001650 | - | |
Cmu09g0076 | 514 | CDD | DEADc_EIF4A | 146 | 343 | - | - | |
Cmu09g0076 | 514 | SMART | ultradead3 | 160 | 357 | IPR014001 | - | |
Cmu09g0076 | 514 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 353 | 514 | IPR001650 | - | |
Cmu09g0076 | 514 | CDD | SF2_C_DEAD | 354 | 484 | - | - | |
Cmu09g0076 | 514 | FunFam | Eukaryotic initiation factor 4A-II | 129 | 348 | - | - | |
Cmu09g0076 | 514 | FunFam | Eukaryotic initiation factor 4A-III | 349 | 514 | - | - | |
Cmu09g0076 | 514 | Gene3D | - | 131 | 349 | IPR027417 | - | |
Cmu09g0076 | 514 | Gene3D | - | 350 | 514 | IPR027417 | - | |
Cmu09g0076 | 514 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 141 | 169 | IPR014014 | GO:0003724(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g1268 | Cmu-Chr8:25012389 | Cmu09g0076 | Cmu-Chr9:936001 | 2.30E-62 | dispersed | |
Cmu09g0076 | Cmu-Chr9:936001 | Cmu09g0294 | Cmu-Chr9:2850478 | 1.80E-49 | dispersed | |
Cmu01g0072 | Cmu-Chr1:564932 | Cmu09g0076 | Cmu-Chr9:936001 | 4.60E-49 | transposed | |
Cmu01g0510 | Cmu-Chr1:5288155 | Cmu09g0076 | Cmu-Chr9:936001 | 4.10E-39 | transposed | |
Cmu01g0789 | Cmu-Chr1:8975500 | Cmu09g0076 | Cmu-Chr9:936001 | 3.60E-38 | transposed | |
Cmu02g1862 | Cmu-Chr2:32564111 | Cmu09g0076 | Cmu-Chr9:936001 | 9.00E-54 | transposed | |
Cmu03g2379 | Cmu-Chr3:32494900 | Cmu09g0076 | Cmu-Chr9:936001 | 1.90E-54 | transposed | |
Cmu10g1961 | Cmu-Chr10:25254719 | Cmu09g0076 | Cmu-Chr9:936001 | 1.20E-141 | transposed | |
Cmu10g2682 | Cmu-Chr10:33597906 | Cmu09g0076 | Cmu-Chr9:936001 | 1.10E-54 | transposed | |
Cmu11g1663 | Cmu-Chr11:28873414 | Cmu09g0076 | Cmu-Chr9:936001 | 5.20E-51 | transposed | |
Cmu09g0976 | Cmu-Chr9:9871022 | Cmu09g0076 | Cmu-Chr9:936001 | 1.60E-31 | transposed | |
Cmu07g1367 | Cmu-Chr7:28966201 | Cmu09g0076 | Cmu-Chr9:936001 | 8.60E-233 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu09g0076 | K03257 | - | csv:101221456 | 816.224 |