Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0076 ATGATGGAACAATTCTGGGAACCTCGATCTACGACGGTTCTGGATTCTCAATATCCTTTGATTGTTTTTAGCCACCGTGACCTACGCAGTCCAAGGGTTACACTACAAAAACCTAACAGCCTTCACAAAAACTTCCCTCTTTCGCTCGCTGCGCTTTGCCCAACACTCGCCTCCAACTCCACGGATCAGATCCGAAGAGTTTGGCAAACCCTAGCTTCCTTTCTTCAATCTCCATCTGTTTCATCTTCCTCTTTCTTCTCTAACATTCCGCAGACTACCCCTGTTCTTAGCCCTTCCGTATCCATGGCAGGTTTAGCTCCAGAAGGATCCCAGTTTGATTCTCGCCAATATGATGCTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTCTTTACCTCATATGATGAAGTATATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAATCTCCTTAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTTCAGCAACTTGATTATGGTCTAATCCAGTGTCAGGCATTAGTTCTGGCTCCGACTAGGGAGCTGGCTCAACAAATCGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTCAAGGTTCATGCTTGTGTAGGAGGGACAAGTGTCCGTGAAGATCAACGCATTCTTCAAGCTGGTGTTCATGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATCTATGACATTTTCCAGCTGTTGCCGTCAAAAATTCAAGTTGGGGTATTCTCCGCCACAATGCCACCAGAAGCTTTGGAGATCACGAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTCGATAAGGAAGATTGGAAGCTCGAAACTCTATGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTTATTTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCAGCCACCCATGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGTTCGTCTCGTGTCCTTATCACAACTGACTTGTTAGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTACCAACCCAACCAGAAAATTACCTTCATCGAATTGGCCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAAATGATGATGACAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATCGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA 1545 43.95 MMEQFWEPRSTTVLDSQYPLIVFSHRDLRSPRVTLQKPNSLHKNFPLSLAALCPTLASNSTDQIRRVWQTLASFLQSPSVSSSSFFSNIPQTTPVLSPSVSMAGLAPEGSQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDDRMLFDIQKFYNVVIEELPANVADLL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 936001 941182 - CmPI595203_09g000760.1 Cmu09g0076 423305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0076 514 Pfam DEAD/DEAH box helicase 166 328 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cmu09g0076 514 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 342 IPR014001 -
Cmu09g0076 514 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 288 296 IPR000629 -
Cmu09g0076 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 495 IPR027417 -
Cmu09g0076 514 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 136 500 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cmu09g0076 514 SMART helicmild6 394 475 IPR001650 -
Cmu09g0076 514 Pfam Helicase conserved C-terminal domain 367 475 IPR001650 -
Cmu09g0076 514 CDD DEADc_EIF4A 146 343 - -
Cmu09g0076 514 SMART ultradead3 160 357 IPR014001 -
Cmu09g0076 514 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 353 514 IPR001650 -
Cmu09g0076 514 CDD SF2_C_DEAD 354 484 - -
Cmu09g0076 514 FunFam Eukaryotic initiation factor 4A-II 129 348 - -
Cmu09g0076 514 FunFam Eukaryotic initiation factor 4A-III 349 514 - -
Cmu09g0076 514 Gene3D - 131 349 IPR027417 -
Cmu09g0076 514 Gene3D - 350 514 IPR027417 -
Cmu09g0076 514 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1268 Cmu-Chr8:25012389 Cmu09g0076 Cmu-Chr9:936001 2.30E-62 dispersed
Cmu09g0076 Cmu-Chr9:936001 Cmu09g0294 Cmu-Chr9:2850478 1.80E-49 dispersed
Cmu01g0072 Cmu-Chr1:564932 Cmu09g0076 Cmu-Chr9:936001 4.60E-49 transposed
Cmu01g0510 Cmu-Chr1:5288155 Cmu09g0076 Cmu-Chr9:936001 4.10E-39 transposed
Cmu01g0789 Cmu-Chr1:8975500 Cmu09g0076 Cmu-Chr9:936001 3.60E-38 transposed
Cmu02g1862 Cmu-Chr2:32564111 Cmu09g0076 Cmu-Chr9:936001 9.00E-54 transposed
Cmu03g2379 Cmu-Chr3:32494900 Cmu09g0076 Cmu-Chr9:936001 1.90E-54 transposed
Cmu10g1961 Cmu-Chr10:25254719 Cmu09g0076 Cmu-Chr9:936001 1.20E-141 transposed
Cmu10g2682 Cmu-Chr10:33597906 Cmu09g0076 Cmu-Chr9:936001 1.10E-54 transposed
Cmu11g1663 Cmu-Chr11:28873414 Cmu09g0076 Cmu-Chr9:936001 5.20E-51 transposed
Cmu09g0976 Cmu-Chr9:9871022 Cmu09g0076 Cmu-Chr9:936001 1.60E-31 transposed
Cmu07g1367 Cmu-Chr7:28966201 Cmu09g0076 Cmu-Chr9:936001 8.60E-233 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0076 K03257 - csv:101221456 816.224