Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0082 ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGACGAAGAAACGGCATCATCAAAGCCCTCACCGCAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCATTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTAAAAACGAGGGAAGCTGAAATGCAAGGAATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGTGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCTAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAAGCCGCATTTAA 756 42.86 MDGGGAVHNRSVEDVFSDFRGRRNGIIKALTADVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSLKTREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1019680 1022082 - CmPI595203_09g000820.1 Cmu09g0082 423311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0082 251 SMART PHD_3 197 245 IPR001965 -
Cmu09g0082 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cmu09g0082 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Cmu09g0082 251 MobiDBLite consensus disorder prediction 147 174 - -
Cmu09g0082 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cmu09g0082 251 FunFam PHD finger alfin-like protein 190 246 - -
Cmu09g0082 251 Pfam PHD-finger 198 244 IPR019787 -
Cmu09g0082 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Cmu09g0082 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cmu09g0082 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cmu09g0082 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0082 K26274 - - csv:101222322 499.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0935 Cmu-Chr8:21711968 Cmu09g0082 Cmu-Chr9:1019680 2.00E-96 dispersed
Cmu09g0082 Cmu-Chr9:1019680 Cmu10g1556 Cmu-Chr10:11312678 9.00E-95 dispersed
Cmu11g0156 Cmu-Chr11:2049808 Cmu09g0082 Cmu-Chr9:1019680 3.40E-110 wgd
Cmu03g2125 Cmu-Chr3:29668409 Cmu09g0082 Cmu-Chr9:1019680 1.60E-21 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g1556 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 3.9e-114 407.9
Cmu11g0156 . 9 248 Alfin-like Transcription Factor Family AT1G14510 69.7 2.6e-94 342.0
Cmu09g0082 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 2.5e-92 335.5
Cmu08g0935 . 9 225 Alfin-like Transcription Factor Family AT1G14510 70.5 3.6e-83 305.1
Cmu10g2914 . 1 238 Alfin-like Transcription Factor Family AT1G14510 58.9 1.6e-78 289.7
Cmu07g0469 . 8 120 Alfin-like Transcription Factor Family AT1G14510 69.6 7.3e-44 174.5
Cmu11g0156 . 1 250 Alfin-like Transcription Factor Family AT5G26210 76.0 8.3e-112 400.2
Cmu09g0082 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.7 4.0e-98 354.8
Cmu10g1556 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.5 2.7e-94 342.0
Cmu08g0935 . 1 225 Alfin-like Transcription Factor Family AT5G26210 71.4 7.3e-92 334.0
Cmu10g2914 . 1 240 Alfin-like Transcription Factor Family AT5G26210 56.7 2.4e-79 292.4
Cmu07g0469 . 7 111 Alfin-like Transcription Factor Family AT5G26210 74.3 6.7e-45 177.9
Cmu11g0156 . 1 250 Alfin-like Transcription Factor Family AT3G42790 70.1 4.9e-101 364.4
Cmu09g0082 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.5 2.1e-96 349.0
Cmu10g1556 . 9 255 Alfin-like Transcription Factor Family AT3G42790 72.1 6.0e-91 330.9
Cmu08g0935 . 1 225 Alfin-like Transcription Factor Family AT3G42790 67.4 7.1e-84 307.4
Cmu10g2914 . 9 240 Alfin-like Transcription Factor Family AT3G42790 57.9 2.6e-78 288.9
Cmu07g0469 . 7 111 Alfin-like Transcription Factor Family AT3G42790 73.3 4.7e-43 171.8
Cmu10g2914 . 6 241 Alfin-like Transcription Factor Family AT5G05610 75.1 1.2e-104 376.3
Cmu11g0156 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.2 5.3e-92 334.3
Cmu09g0082 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 2.2e-90 328.9
Cmu10g1556 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.2 3.1e-84 308.5
Cmu08g0935 . 8 225 Alfin-like Transcription Factor Family AT5G05610 65.1 1.3e-79 293.1
Cmu07g0469 . 1 120 Alfin-like Transcription Factor Family AT5G05610 78.3 1.1e-52 203.8
Cmu10g2914 . 44 241 Alfin-like Transcription Factor Family AT3G11200 75.7 7.1e-86 313.9
Cmu09g0082 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.7 4.8e-74 274.6
Cmu11g0156 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.3 1.4e-73 273.1
Cmu10g1556 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.2 7.1e-70 260.8
Cmu08g0935 . 44 225 Alfin-like Transcription Factor Family AT3G11200 64.3 3.8e-63 238.4
Cmu07g0469 . 43 120 Alfin-like Transcription Factor Family AT3G11200 89.7 5.5e-38 154.8
Cmu10g1556 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.5e-76 283.1
Cmu11g0156 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 6.8e-66 247.7
Cmu08g0935 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.4e-65 245.0
Cmu09g0082 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 1.9e-63 239.6
Cmu10g2914 . 1 156 Alfin-like Transcription Factor Family AT2G02470 65.4 4.6e-54 208.4
Cmu07g0469 . 8 120 Alfin-like Transcription Factor Family AT2G02470 70.4 1.6e-43 173.3
Cmu08g0935 . 1 167 Alfin-like Transcription Factor Family AT5G20510 77.4 2.5e-73 271.9
Cmu11g0156 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 6.9e-71 263.8
Cmu09g0082 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.8 2.5e-68 255.4
Cmu10g1556 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.9e-67 250.4
Cmu10g2914 . 8 158 Alfin-like Transcription Factor Family AT5G20510 61.8 3.6e-51 198.4
Cmu07g0469 . 7 111 Alfin-like Transcription Factor Family AT5G20510 72.4 2.1e-43 172.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6759 PF12165 Alfin 3.10E-68 No_clan Cmu TF