Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0082 ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGACGAAGAAACGGCATCATCAAAGCCCTCACCGCAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCATTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTAAAAACGAGGGAAGCTGAAATGCAAGGAATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGTGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCTAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAAGCCGCATTTAA 756 42.86 MDGGGAVHNRSVEDVFSDFRGRRNGIIKALTADVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSLKTREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1019680 1022082 - CmPI595203_09g000820.1 Cmu09g0082 423311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0082 251 SMART PHD_3 197 245 IPR001965 -
Cmu09g0082 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cmu09g0082 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Cmu09g0082 251 MobiDBLite consensus disorder prediction 147 174 - -
Cmu09g0082 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cmu09g0082 251 FunFam PHD finger alfin-like protein 190 246 - -
Cmu09g0082 251 Pfam PHD-finger 198 244 IPR019787 -
Cmu09g0082 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Cmu09g0082 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cmu09g0082 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cmu09g0082 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0935 Cmu-Chr8:21711968 Cmu09g0082 Cmu-Chr9:1019680 2.00E-96 dispersed
Cmu09g0082 Cmu-Chr9:1019680 Cmu10g1556 Cmu-Chr10:11312678 9.00E-95 dispersed
Cmu11g0156 Cmu-Chr11:2049808 Cmu09g0082 Cmu-Chr9:1019680 3.40E-110 wgd
Cmu03g2125 Cmu-Chr3:29668409 Cmu09g0082 Cmu-Chr9:1019680 1.60E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6759 PF12165 Alfin 3.10E-68 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0082 K26274 - csv:101222322 499.975