Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0100 ATGGGTTTCAAAAAGCTATTCTCTCTAAAATATTTGATACCCAGTTGTTTAAAGCCAAAGAAGCTGCTCACAGGCCCTTCTTCTGCTGGATTTCAAACCTCAAAAAAAATATCTCTTAGAAGAATCTTATCATTGTCTGATATGAGTGTTAGATCATCTTTATCAGTTATTAGTGATCTTTCAAACTCTTGTAATGGTTCAAATCTTCAAATTTTCACCTTTAAAGAACTTGAGGAAGTCACTGAAAACTTCACCAAAAGTAATTATTTGGGTGAAGGAGGATTTGGGCCTGTGTTTAAAGGGTTCATTGAAGACAATTTCAAGCCTGGTTTGAAATCACAGCAAGTGGCTGTGAAGATTTTGGATTTGGATGGCTCTCAAGGCCATAGAGAGTGGCTGGCTGAAGTGTTTTTTCTTGGGCAATTGAGACACCCAAATCTTGTTAATTTGATTGGATATTGTCTTGAAGATGAACAGAGGCTTCTTGTATATGAATATATGGAAGGAGGAAACTTGGAGAATCTGTTGTTTAAATGTTGTTATGTTTCAAATTTGACATGGTTACAAAGGATAAAAATTGCATTAGGATCAGCAAAAGGCCTTGCTTTCTTGCACGAAACCGAAAAACCGATCATTTTTCGAGATTTCAAGGCTTCGAACATCTTACTCGACTCGGATTACAATCCGAAACTTTCAGATTTTGGGTTGGCCATAAATGGTCCCGACGAAGATGATACACATGTAACGACTCGAATCATGGGGACAGAAGGTTATGCGGCCCCAGAATACATCATGACAGGTCATTTGTCAACAATGAGTGATGTGTTCAGCTTTGGGGTGCTTCTATTAGAGTTGCTAACCGGTCGACGAGCGATCGACAAGAATCGACCGAGCCGAGAACAGAACTTGGTGGCTTGGGGAAGACATCTTTTGAAAGATCAACACAAACTTGAAAAGATAATTGATCCAAGGCTTGAGGGGCATTACTCAAATGAAGGGGTTAAAAAATTAGCTACAATAGCTCACCAATGCCTTAGCCACCACCCAAAATGTAGGCCCTCAATGAGCACAGTGGTGAAGGATTTGGAAGTTGTTCTTAACATGAAAGAGTTTCTAACTGAGCCATTTGTGTATATTGTCCCAAGTGAAGAGATGAAAGAGGTGGAGAGACTGGAGAATCGTCATCGGTACGATGACCGAAAAGGTCGAAGCTATAGGCTTCGGGTGTCGTCATCGAGATTGAGATCTGGTGCTGTTCATTCTGATACAGCCTTTATGGAAAATTTATAG 1290 40.0 MGFKKLFSLKYLIPSCLKPKKLLTGPSSAGFQTSKKISLRRILSLSDMSVRSSLSVISDLSNSCNGSNLQIFTFKELEEVTENFTKSNYLGEGGFGPVFKGFIEDNFKPGLKSQQVAVKILDLDGSQGHREWLAEVFFLGQLRHPNLVNLIGYCLEDEQRLLVYEYMEGGNLENLLFKCCYVSNLTWLQRIKIALGSAKGLAFLHETEKPIIFRDFKASNILLDSDYNPKLSDFGLAINGPDEDDTHVTTRIMGTEGYAAPEYIMTGHLSTMSDVFSFGVLLLELLTGRRAIDKNRPSREQNLVAWGRHLLKDQHKLEKIIDPRLEGHYSNEGVKKLATIAHQCLSHHPKCRPSMSTVVKDLEVVLNMKEFLTEPFVYIVPSEEMKEVERLENRHRYDDRKGRSYRLRVSSSRLRSGAVHSDTAFMENL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1155222 1156923 + CmPI595203_09g001000.1 Cmu09g0100 423329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0100 429 Gene3D Phosphorylase Kinase; domain 1 55 166 - -
Cmu09g0100 429 Pfam Protein tyrosine and serine/threonine kinase 87 362 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g0100 429 ProSiteProfiles Protein kinase domain profile. 84 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g0100 429 Gene3D Transferase(Phosphotransferase) domain 1 167 374 - -
Cmu09g0100 429 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 167 374 - -
Cmu09g0100 429 SUPERFAMILY Protein kinase-like (PK-like) 69 386 IPR011009 -
Cmu09g0100 429 FunFam Serine/threonine-protein kinase BIK1 51 166 - -
Cmu09g0100 429 PANTHER OS01G0588500 PROTEIN-RELATED 60 365 IPR050823 -
Cmu09g0100 429 CDD STKc_IRAK 90 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1620 Cmu-Chr5:26021709 Cmu09g0100 Cmu-Chr9:1155222 8.10E-109 dispersed
Cmu09g0100 Cmu-Chr9:1155222 Cmu10g2987 Cmu-Chr10:36037587 1.90E-105 dispersed
Cmu11g0143 Cmu-Chr11:1964525 Cmu09g0100 Cmu-Chr9:1155222 5.90E-121 wgd
Cmu03g2106 Cmu-Chr3:29484308 Cmu09g0100 Cmu-Chr9:1155222 4.50E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75765 PF07714 PK_Tyr_Ser-Thr 5.20E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0100 - - - 0.0