Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0129 ATGTTCATCCTTCGACTGAGTGTCTTGGAGAATCTAAAGGGCAGTCGTCGAAATTCTTGGGCTCGTGGGTTAGACCGTACAATTGGTTTGTTCAAAAATTCTTTAGGAAAAGTAAAGAAATCGGTTACTTGTTTTAATCAACGTAAGGGCGTAAAGGATTCTCCTCCTTGGTGGACTCGAATGTTGATCTTTAAAGCTACGGACTACTTAGGGTTTTCGATTTTCCTGATTTTTTCCATTCGCTGCTCGATCTTCCTTCCTCCAGTCGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATCCCCTGTGGTAGTGTTCCTGAAGATAAATGTAAGAAGGATAATCCAGAGGATCAGCAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGTAAAGATCAGTTTTGTAGGGTTCTTGAATCATATAAACCAAACATTGTTTACTTACAAGGGGAACAACTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGATGTTGATTTGTCCACCGTAGAAGCGATAAGTGGGCTCTTTAGTTATCCGTTGTCCACCACTGTATATTTGGAAATAGCAAAGGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATACTGGAGAGGCACATTTTCTTGTTATGAAGCATGCCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGACGCATTTCAACTTGCAAATGCTTCATTTAGGATGTATTGCTTGGGAAACAACCTTGTTTTTCCTAACAGTAGTCATGAAGAAGTTAGTGAAGATCGGGGTCCACATCTTCTAGGGGAACGCTTGAAAATAAATATTGAACCCCTTGAGAAAGAGGCAGCTGACGATGAAGAAAGTTCATCGGAAATTCCTTCTGTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTTGTATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAACGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCGACATGCAGTTTTGCCCACATCTCACTATTGGTGTCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTGTAGACAGAGGCGAACTAGTGCAGACACTAATCGATGGTGAAGGAACCAAACGCTTATCTGAGCCACGGAAATCTGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTCCCTTCATGGGCATCTCAGATTTTGAGGCAGTTGGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGTCTGGGCATTGCCAGCATCCAGGGTTTTTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTCCTTTTCTTCTGTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTTAACCGATAGCACACTCCCAAGCTGGTTGAAACCACCTGCTCCTAGAAAGAGATCGAAATATATGAAAGATCCAAGCCTTGGTTCTCATGATGTTATTGAACATCTGAAGGTTTCGTCTGGTAGGAGAATAGATAGCGTGAACATGGAAATAGGATCAAGGAATGGTTTTAGCACTCCCACGTTCCCATTCCCAAGAAGGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATCTCTTTTCATGGAATAGAGACAGGTGGGCACAATGGAAGCCTGGTTAAAGCTAGTGTTCCTTCTAGTAATCCCACAAAGCATGTGACCGTAGGTTCAGCTTCAGTTTTTCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACAAATCATTCCCATTAATCCATTACCTTTGAAGAAGCACGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGATGAATTTTTGAAGGATTTGCTGCAGTTTTTAGCTCTTCGAGGTCACAACCGACTTATACCTCCAGGTGGGCTTGCCGAGTTTCCAGATGCTATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTCCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTTTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTCGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTAGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCCGGGGACTGGGTGAACTGTGGCATTTGTGGGGAGTGGGCACACTTCGGCTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTGGCAAATGGGTTGTCTCCAGGCTTCTCCTCAAGACCAATATGA 2592 42.71 MFILRLSVLENLKGSRRNSWARGLDRTIGLFKNSLGKVKKSVTCFNQRKGVKDSPPWWTRMLIFKATDYLGFSIFLIFSIRCSIFLPPVVPARYTCRLLAIPCGSVPEDKCKKDNPEDQQRYPFPQLNSSGRLEVQVLSNPSKDQFCRVLESYKPNIVYLQGEQLENDEVGSLVWGDVDLSTVEAISGLFSYPLSTTVYLEIAKGDEVADALHSKGIPYVIYWRGTFSCYEACHFRNAFLSVLQSSSAHTWDAFQLANASFRMYCLGNNLVFPNSSHEEVSEDRGPHLLGERLKINIEPLEKEAADDEESSSEIPSVSILDNDVEMRFLVCGEPGSLDAYVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIVDRGELVQTLIDGEGTKRLSEPRKSVSIACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGFSVASFEKDDAERLLFFCSRKEKDLFLSNLTDSTLPSWLKPPAPRKRSKYMKDPSLGSHDVIEHLKVSSGRRIDSVNMEIGSRNGFSTPTFPFPRRRGMKIAAMRPIPHVNRHKMISFHGIETGGHNGSLVKASVPSSNPTKHVTVGSASVFQQKMFPSASQYKQIIPINPLPLKKHGCGRSPIQACFEDEFLKDLLQFLALRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVANGLSPGFSSRPI 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1477263 1483234 - CmPI595203_09g001290.1 Cmu09g0129 423358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0129 863 SUPERFAMILY FYVE/PHD zinc finger 775 843 IPR011011 -
Cmu09g0129 863 SMART ARID_2 676 779 - -
Cmu09g0129 863 SMART bright_3 680 784 IPR001606 GO:0003677(InterPro)
Cmu09g0129 863 Pfam ARID/BRIGHT DNA binding domain 683 779 IPR001606 GO:0003677(InterPro)
Cmu09g0129 863 ProSiteProfiles ARID domain profile. 679 783 IPR001606 GO:0003677(InterPro)
Cmu09g0129 863 CDD PHD_ARID4_like 789 840 - -
Cmu09g0129 863 CDD ARID 682 779 - -
Cmu09g0129 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 849 IPR013083 -
Cmu09g0129 863 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 92 855 IPR042293 -
Cmu09g0129 863 Gene3D - 676 779 IPR036431 GO:0003677(InterPro)
Cmu09g0129 863 SUPERFAMILY ARID-like 682 794 IPR036431 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0129 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1412 Cmu-Chr7:29339059 Cmu09g0129 Cmu-Chr9:1477263 2.00E-302 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu06g0782 . 64 415 ARID Transcription Factor Family AT1G04880 58.4 9.7e-108 387.5
Cmu10g0856 . 324 594 ARID Transcription Factor Family AT1G20910 61.4 1.5e-91 333.6
Cmu05g1576 . 16 309 ARID Transcription Factor Family AT1G76110 67.8 5.4e-111 397.9
Cmu10g0856 . 303 616 ARID Transcription Factor Family AT1G76510 57.9 1.7e-101 366.7
Cmu07g1412 . 1 781 ARID Transcription Factor Family AT3G43240 58.9 3.4e-267 917.9
Cmu09g0129 . 92 853 ARID Transcription Factor Family AT3G43240 58.0 4.2e-257 884.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6766 PF01388 ARID 3.40E-15 CL0123 Cmu TR