Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0141 ATGGATTGGAGGTGGAGGGAGCTGATATCTCTCATCATTCTCTGCATTCTAGGGTGGAAGCCTAGCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAGGGTTTTGTACACCAGTTTAAACTCGCCCTCTCAGTTAACCCAGTGGAACGCAAATGGCGATGATCCTTGTGGACAATCATGGAAGGGAATTACTTGCTCCGGCTCACGGGTTACAGAAATAAACTTATCTGGCCTTGGACTCAGTGGATCGCTCGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGGATGTGAGTAGTAACAATTTTGGAGGCGAGATTGTCTACAACCTTCCACCTAATCTAAAAAGACTAAATCTTGCACGAAACAACTTCAATAAAGGCATTCCTTATTCCGTTTCATTGATGACTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGGATCCATTGAATGATGTGTATGGGCAGCTAACTTCCCTATCCACATTGGATCTATCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTACACTGGCACAATTGATGTCCTTGCAACTCTACCTCTTAATAACCTGAATGTTGAAAATAACCGTTTCACCGGATGGATCCCTGAACAACTGAAAAACATCAATCTGCAGACAAATGGCAACTCTTGGAACTCCGGTCCTGCACCCCCTCCTCCACCTGGTACACCCCCAGCCACCAGAAGAAACCGAAATCAACATTCAGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGAATTAGTGGTGGTGGCATTGCAGGGATTATCATCTCCGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAAGAGGAGATCCAAGAGATCATCTACAGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAAAGTGACTGCAGCACAAGAAACAAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACATCATTTGACACTTCTGCTGCAATAAATCTTAAACCCCCACCTATCGATCGTCATAAATCATTTGATGAAGACGACTTCTCAAAACGAGCTGCAGTCAAGAAGGCTAGTGCTGCAGCTCCCATTAATGTAAAGTCATATTCCATAGCAGACCTTCAAATTGCTACAGGCAGCTTCAGTGTTGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTATATCGGGCTGAGTTTGACGACGGGAAGGTTCTTGCCGTGAAAAAGATAAATTCATCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCTAAAGTCTCCCAGTTACACCATCCCAATATAACTGAACTCGTGGGTTATTGCTTAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCACAAAAATGGTTCGCTTTACGACTTATTACATCTATCAGATGAATACAACAAACCTCTGATATGGAACTCACGCATTAAGATTGCTTTGGGAACAGCGCGAGCATTGGAGTATCTTCATGAAGTGTGCTCCCCATCTATTGTTCATAGAAACGTCAAGTCTGCTAACATATTGTTAGATGCCGAACTCAGCCCCCACCTTTCTGACTCTGGACTGGAAAGCTTTGTACCAAATGCAGATCAGGCGTTGGATGGCAGTGCAAGTTCAGGATATGCTGCCCCGGAAGTTACCATGTCCGGTCAATATACTCTGCAAAGTGACGTTTACAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTCGACAGTTCAAGGGCGAGGATGGAGCAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTACCCCGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTTCAGACGGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTCGAAGCGTTGGTCCGTTTGGTGCAGCGAGCAAACATGAGTAAGAGAACATATGGAAATGATAATGCAACATCTCCGAGAGGGGAGATGGGTGGGGAGGACACGCCATAA 2142 44.72 MDWRWRELISLIILCILGWKPSCIQGTTDPTDASALRVLYTSLNSPSQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLGSMTSVTNLDVSSNNFGGEIVYNLPPNLKRLNLARNNFNKGIPYSVSLMTSLQYLNISHNQLQDPLNDVYGQLTSLSTLDLSFNAMSGNLPQSFSSLSSISTMYLQNNQYTGTIDVLATLPLNNLNVENNRFTGWIPEQLKNINLQTNGNSWNSGPAPPPPPGTPPATRRNRNQHSGGSPSNGGSSEGQKSGISGGGIAGIIISVLVVGAVVAFFLVKRRSKRSSTDIEKLDNQPLQPLKVTAAQETKSEETSSTFYPTSFDTSAAINLKPPPIDRHKSFDEDDFSKRAAVKKASAAAPINVKSYSIADLQIATGSFSVENLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCLEHGQHLLVYEFHKNGSLYDLLHLSDEYNKPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNVKSANILLDAELSPHLSDSGLESFVPNADQALDGSASSGYAAPEVTMSGQYTLQSDVYSFGVVMLELLTGRKPFDSSRARMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1595205 1600359 - CmPI595203_09g001410.1 Cmu09g0141 423370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0141 713 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g0141 713 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cmu09g0141 713 CDD STKc_IRAK 415 684 - -
Cmu09g0141 713 MobiDBLite consensus disorder prediction 238 284 - -
Cmu09g0141 713 MobiDBLite consensus disorder prediction 260 284 - -
Cmu09g0141 713 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524(InterPro)
Cmu09g0141 713 Pfam Leucine Rich repeat 95 114 IPR001611 GO:0005515(InterPro)
Cmu09g0141 713 Pfam Leucine Rich repeat 142 156 IPR001611 GO:0005515(InterPro)
Cmu09g0141 713 Gene3D Ribonuclease Inhibitor 29 256 IPR032675 -
Cmu09g0141 713 SUPERFAMILY Protein kinase-like (PK-like) 392 681 IPR011009 -
Cmu09g0141 713 PANTHER LEUCINE RICH REPEAT KINASE 2 292 683 IPR051420 -
Cmu09g0141 713 MobiDBLite consensus disorder prediction 693 713 - -
Cmu09g0141 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 373 486 - -
Cmu09g0141 713 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515(InterPro)
Cmu09g0141 713 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g0141 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 255 - -
Cmu09g0141 713 Gene3D Phosphorylase Kinase; domain 1 372 486 - -
Cmu09g0141 713 SUPERFAMILY L domain-like 28 234 - -
Cmu09g0141 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 487 695 - -
Cmu09g0141 713 Gene3D Transferase(Phosphotransferase) domain 1 488 703 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0141 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0448 Cmu-Chr8:14837565 Cmu09g0141 Cmu-Chr9:1595205 2.00E-136 dispersed
Cmu09g0141 Cmu-Chr9:1595205 Cmu10g2475 Cmu-Chr10:31363250 5.30E-92 dispersed
Cmu07g1401 Cmu-Chr7:29264052 Cmu09g0141 Cmu-Chr9:1595205 4.30E-205 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu02g0127 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.6e-205 711.1
Cmu01g2223 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 3.0e-141 499.6
Cmu09g0141 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 3.4e-92 336.7
Cmu10g2475 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Cmu08g0448 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Cmu07g1401 . 166 855 Strubbelig Receptor Gene Family AT1G78980 50.9 6.3e-146 515.0
Cmu09g0141 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 5.7e-123 438.7
Cmu08g0448 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.6e-148 521.5
Cmu01g0940 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.4e-84 311.2
Cmu10g2475 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Cmu02g0127 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.6e-205 711.1
Cmu01g2223 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 3.0e-141 499.6
Cmu09g0141 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 3.4e-92 336.7
Cmu08g0448 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.6e-148 521.5
Cmu08g0448 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Cmu07g1401 . 166 855 Strubbelig Receptor Gene Family AT1G78980 50.9 6.3e-146 515.0
Cmu09g0141 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 5.7e-123 438.7
Cmu07g1401 . 161 855 Strubbelig Receptor Gene Family AT1G53730 60.3 4.1e-201 698.4
Cmu09g0141 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.7 5.8e-187 651.4
Cmu08g0448 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Cmu01g0940 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.5e-147 518.8
Cmu07g1401 . 161 850 Strubbelig Receptor Gene Family AT3G14350 56.8 1.5e-179 626.7
Cmu09g0141 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.6 2.6e-168 589.3
Cmu01g0940 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.2e-177 618.2
Cmu07g1401 . 534 862 Strubbelig Receptor Gene Family AT4G22130 63.4 4.8e-120 428.7
Cmu09g0141 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 2.9e-117 419.5
Cmu02g0127 . 485 796 Strubbelig Receptor Gene Family AT4G22130 58.8 6.0e-107 385.2
Cmu08g0448 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Cmu10g2475 . 387 709 Strubbelig Receptor Gene Family AT4G22130 51.7 9.4e-92 334.7
Cmu01g2223 . 442 709 Strubbelig Receptor Gene Family AT4G22130 60.0 1.4e-90 330.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75766 PF07714 PK_Tyr_Ser-Thr 2.70E-42 CL0016 Cmu PK