Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0157 ATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGACTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTGGATCGAGGAGGAGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTATTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCATCAATCCCAATAACTAATCAACAGAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAATCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGCAAAAATCATCCATCTCTCCTACAGAGATTAGTTTGAAACGGGGTATCCAATGGCTGACACTAACGTTAGGGTTGAATCAAATCTGGTCTGAATGA 960 44.69 MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTATFNRNEQKSSISPTEISLKRGIQWLTLTLGLNQIWSE 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1719868 1725397 + CmPI595203_09g001570.1 Cmu09g0157 423386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0157 319 Gene3D - 221 291 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu09g0157 319 Pfam tify domain 84 112 IPR010399 -
Cmu09g0157 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 286 - -
Cmu09g0157 319 SMART GATA_3 225 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0157 319 CDD ZnF_GATA 231 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0157 319 MobiDBLite consensus disorder prediction 273 292 - -
Cmu09g0157 319 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0157 319 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cmu09g0157 319 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Cmu09g0157 319 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Cmu09g0157 319 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0157 319 SMART tify_2 78 113 IPR010399 -
Cmu09g0157 319 PANTHER GATA TRANSCRIPTION FACTOR 28 29 287 IPR045280 GO:0006355(InterPro)
Cmu09g0157 319 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1097 Cmu-Chr8:23310571 Cmu09g0157 Cmu-Chr9:1719868 3.30E-50 dispersed
Cmu09g0157 Cmu-Chr9:1719868 Cmu09g1583 Cmu-Chr9:30098009 7.20E-57 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6767 PF06203 CCT 9.30E-15 CL0281 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0157 - - - 0.0