Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0157 ATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGACTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTGGATCGAGGAGGAGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTATTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCATCAATCCCAATAACTAATCAACAGAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAATCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGCAAAAATCATCCATCTCTCCTACAGAGATTAGTTTGAAACGGGGTATCCAATGGCTGACACTAACGTTAGGGTTGAATCAAATCTGGTCTGAATGA 960 44.69 MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTATFNRNEQKSSISPTEISLKRGIQWLTLTLGLNQIWSE 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1719868 1725397 + CmPI595203_09g001570.1 Cmu09g0157 423386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0157 319 Gene3D - 221 291 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu09g0157 319 Pfam tify domain 84 112 IPR010399 -
Cmu09g0157 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 286 - -
Cmu09g0157 319 SMART GATA_3 225 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0157 319 CDD ZnF_GATA 231 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0157 319 MobiDBLite consensus disorder prediction 273 292 - -
Cmu09g0157 319 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0157 319 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cmu09g0157 319 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Cmu09g0157 319 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Cmu09g0157 319 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0157 319 SMART tify_2 78 113 IPR010399 -
Cmu09g0157 319 PANTHER GATA TRANSCRIPTION FACTOR 28 29 287 IPR045280 GO:0006355(InterPro)
Cmu09g0157 319 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0157 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1097 Cmu-Chr8:23310571 Cmu09g0157 Cmu-Chr9:1719868 3.30E-50 dispersed
Cmu09g0157 Cmu-Chr9:1719868 Cmu09g1583 Cmu-Chr9:30098009 7.20E-57 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g0157 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cmu08g1098 . 204 397 Tify Gene Family AT4G24470 61.8 1.6e-59 226.9
Cmu09g1583 . 89 267 Tify Gene Family AT4G24470 59.7 3.6e-48 189.1
Cmu09g0157 . 1 288 Tify Gene Family AT1G51600 59.1 1.1e-86 317.0
Cmu09g1583 . 86 303 Tify Gene Family AT1G51600 54.4 6.7e-52 201.4
Cmu08g1097 . 155 358 Tify Gene Family AT1G51600 51.2 2.5e-46 183.0
Cmu08g1098 . 198 397 Tify Gene Family AT1G51600 52.3 8.7e-44 174.5
Cmu08g1098 . 204 397 Tify Gene Family AT4G24470 61.8 1.6e-59 226.9
Cmu09g1583 . 89 267 Tify Gene Family AT4G24470 59.7 3.6e-48 189.1
Cmu09g0157 . 1 288 Tify Gene Family AT1G51600 59.1 1.1e-86 317.0
Cmu09g1583 . 86 303 Tify Gene Family AT1G51600 54.4 6.7e-52 201.4
Cmu08g1097 . 155 358 Tify Gene Family AT1G51600 51.2 2.5e-46 183.0
Cmu08g1098 . 198 397 Tify Gene Family AT1G51600 52.3 8.7e-44 174.5
Cmu09g0157 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cmu06g0631 . 1 180 Tify Gene Family AT4G14713 53.1 1.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6767 PF06203 CCT 9.30E-15 CL0281 Cmu TF