Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0176 ATGGCGTGGTTCACCATTGGAAGCTTTCAAGATTCCTTGAGCTTGCGCTCTTGCAAGGCTTATCTTGCTGAGTTCATCTCCACCTTACTCTTTGTTTTCGCCGGTGTCGGCTCCGCCATTGCCTACAATAAAATAACATCGTCAGCAGCTCTAGATCCAGCAGGGCTAGTTGCGGTGGCGGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTCTCCATCGGAGCTAACATCTCCGGTGGCCACGTCAACCCGGCGGTGACGTTCGGGCTTCTTCTTGGAGACCAAATCAGCCTTATTACCACCATTTTTTACTGGATCGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACCGGCGGCCTTGCGGTTCCGGTCCACAGCGTTGCCGCCGGCGTAGGAGCGGCGGAAGGGGTTGTGACGGAGATTGTAACGACCTTCGGTTTGGTTTACACTGTCTATGCGACGGCGGCAGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCGATCGCCATCGGTTTCATCGTGGGAGCAAACATCTTGGCGGCCGGACCGTTTTCCGGCGGGTCGATGAACCCGGCTCGATCTTTCGGTCCGGCGGTGGTCAGTGGCGACTTTCATGATAACTGGATTTACTGGGTTGGGCCGCTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAAATGATTTCTAA 747 54.22 MAWFTIGSFQDSLSLRSCKAYLAEFISTLLFVFAGVGSAIAYNKITSSAALDPAGLVAVAVCHGFALFVAVSIGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVAAGVGAAEGVVTEIVTTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPNDF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1930694 1931931 - CmPI595203_09g001760.1 Cmu09g0176 423405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0176 248 PANTHER AQUAPORIN-8 5 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cmu09g0176 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu09g0176 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu09g0176 248 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu09g0176 248 SUPERFAMILY Aquaporin-like 15 242 IPR023271 -
Cmu09g0176 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cmu09g0176 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu09g0176 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu09g0176 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu09g0176 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu09g0176 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu09g0176 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu09g0176 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Cmu09g0176 248 FunFam Probable aquaporin TIP1-1 2 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0405 Cmu-Chr1:4241537 Cmu09g0176 Cmu-Chr9:1930694 6.60E-98 dispersed
Cmu01g0480 Cmu-Chr1:4947100 Cmu09g0176 Cmu-Chr9:1930694 1.00E-48 dispersed
Cmu08g1164 Cmu-Chr8:24050311 Cmu09g0176 Cmu-Chr9:1930694 2.30E-66 dispersed
Cmu09g0176 Cmu-Chr9:1930694 Cmu10g2714 Cmu-Chr10:33837136 1.50E-70 dispersed
Cmu09g0176 Cmu-Chr9:1930694 Cmu04g0978 Cmu-Chr4:24221808 8.40E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0176 K09873 - csv:101218611 451.055