Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0186 ATGGCCGTTGTCATGTCCGACGACCACCCCTCTCGCCGTCTTAAGATTCTTCCTTCTTCTCCGGCTCTCTCTCTCACTCTTGCTGGGGTTTTTGGGAATGCGGCGGCGATGGATGTGGAGTTCGACGCCCCGGCGAGGAGGGACGACAGCTACAGCGACAACTCTGAACCGGCGGGATCCAGGTCGGCGGAGGATTTGGGGGTCGACCCTGATGATGAAGATGAAGATAAATTACAGGGGAATACAAAGAAGAGGAAGAATCGTCATACTTTAGAGCAAATCAGAGAAATGGAAATGTTGTTTAAAGAATCACCTCATCCAGATGAGAAACAACGGCAACAACTCAGTGAGAAACTTGGTCTTTCTTGTAGGCAAATCAAGTTCTGGTTTCAGAATCGTAGAACTCAAATCAAGGCTATTCACGAGCGTCATGAAAACGCTTTATTGAAAGGAGAAATGGAGAAATTGCGAGAAGAAAACCAAGCTATGAGAGAAATGATCAGTAAATCTTCTTGCCCTAAATGTTGTTCTTCACCTAATTCCGTAGACCCAATTTTCACCAGCTCTGATCAACAACAACAACAACTAGTAACTGAAATTGCTCGACTAAAAGCTGAGGTGGAGAGATTACGAACAGCTCTGGATAAATACGTACCGGCGGGGACATCATCGGGGGAGAACAACGAGGAAGGAATAGAGAGGAGGAGAAATTTGGAGAAATCGAAGAGTATTTTGGGGATGGAGAAAGGTAGGGTTATGATGATAGGGAAGCGGGCGATTGAGGAGGTGGTGAAAATGGGGGATTCCGATGAGCCGCTGTGGGTCAGAAGCGTGGAAACAGGGAGAGAACTACTGAATTACGATGTGTATATGAAGGAATTGGCGGCCGGAAATGAGCGAGGGAAGAGAGAAGTGGAAGCGTCGAGAGAAACCGGCGTGGTGTTCGTGGATCTCCATCGATTGGTTCAGAGCTTCATGGATGTGGTTCAATGGAAGGAAATGTTTCCGTCGATAATCTCCAAGGCGTCGACAATGGAGGTCGTCTGCAATGGCGACGGGACCAACAAGGACGGCGCAGTTCAACTGATGTATGCAGAGCTCCAAATGTTGACCCCAATCCTCCCTCCAAGAGAGATCTTTTTCATTCGAAGTTGCAAGCAACTAAGCTCCGATAAATGGGTCGTCGCCGATGTCTCCATCGACAAAGTCGGAGACCATATCGACTCATCTTCCTCTCGTTGTAGGAAACGCCCATCTGGTTGCATCATCCAAGACACATCTGACGGTCATTGTAAGGTCACGTGGGTAGAGCACTGGGAATGCCACAAGATTGGACTTCACACCATATATCGAACCATTGTCAACAGTGGGTTGATATTCGGGGCGAGGCATTGGAAGGCCACGTTACAAAGCCATTGTGAGTGGCAGGTTTTCTTCATGGCTACCAACGTTCCCATGAAGGATTCCACTGGAATCACCACTGTTGGTGGGAGAAAAAGTGTTCTTCGATTGGCTCAGAGAATGGCCTCTAGTATTTATCAAGCCATTGGTGCTTCAAGCAGCCATACATGGACCAAGATCCAGAGCAAAATAGGTGAAACCATACGTATTGCTTCTAGGAAGAACTTGAAAAACCCACAAGAACCTACTGGTTTGATCTTGTGTGCTGTTGCTTCTGTTTGGCTACCTGTTTCCCCTAAACTCTTGTTCGAATTCTTGATCGATGAATCTCGCCGACCCGAGTGGGATGTAATGCTAAGTGGTGGTCAAGCTGAAATGTTAGCAAACTTTGCCAAAGGACAGAATCGAGGCAATGCCGTAACTATCCAAGCAATAAAATCAGACGAAACCAACACGTGGATTCTACAAGATAGTCTAACGAATGAATACGAATCAACGGTCGTCTATGCTCAAGTTGACATGAATAGCATGAAATCTGTGATGGCCGGGTTCGACCCGAGCAATATCACGACGTTACCGACAGGCTTCTCGATCCTTCCAGATGGACACCCCACAAGGCCATTGGTTATCAGTTCTAGCAAAGAGGAGAGGGAGACAGAAGGAGGCTCATTGCTAACAATAGCATCTCAAATCCTTGTTAGTCCCTCCCCAACAGCCGAAACGACGTCGCAGTCAGTTGATTATGTTAACAATATTATATCACATACATTAGAAAATATTAAAGCAAGCCTAAAAGGTGAGGATGATTGA 2211 46.68 MAVVMSDDHPSRRLKILPSSPALSLTLAGVFGNAAAMDVEFDAPARRDDSYSDNSEPAGSRSAEDLGVDPDDEDEDKLQGNTKKRKNRHTLEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCRQIKFWFQNRRTQIKAIHERHENALLKGEMEKLREENQAMREMISKSSCPKCCSSPNSVDPIFTSSDQQQQQLVTEIARLKAEVERLRTALDKYVPAGTSSGENNEEGIERRRNLEKSKSILGMEKGRVMMIGKRAIEEVVKMGDSDEPLWVRSVETGRELLNYDVYMKELAAGNERGKREVEASRETGVVFVDLHRLVQSFMDVVQWKEMFPSIISKASTMEVVCNGDGTNKDGAVQLMYAELQMLTPILPPREIFFIRSCKQLSSDKWVVADVSIDKVGDHIDSSSSRCRKRPSGCIIQDTSDGHCKVTWVEHWECHKIGLHTIYRTIVNSGLIFGARHWKATLQSHCEWQVFFMATNVPMKDSTGITTVGGRKSVLRLAQRMASSIYQAIGASSSHTWTKIQSKIGETIRIASRKNLKNPQEPTGLILCAVASVWLPVSPKLLFEFLIDESRRPEWDVMLSGGQAEMLANFAKGQNRGNAVTIQAIKSDETNTWILQDSLTNEYESTVVYAQVDMNSMKSVMAGFDPSNITTLPTGFSILPDGHPTRPLVISSSKEERETEGGSLLTIASQILVSPSPTAETTSQSVDYVNNIISHTLENIKASLKGEDD 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2022799 2030147 + CmPI595203_09g001860.1 Cmu09g0186 423415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0186 736 SUPERFAMILY Bet v1-like 518 722 - -
Cmu09g0186 736 SMART START_1 254 475 IPR002913 GO:0008289(InterPro)
Cmu09g0186 736 MobiDBLite consensus disorder prediction 45 92 - -
Cmu09g0186 736 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677(InterPro)
Cmu09g0186 736 Gene3D - 70 151 - -
Cmu09g0186 736 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 73 732 IPR042160 -
Cmu09g0186 736 CDD homeodomain 83 138 IPR001356 GO:0003677(InterPro)
Cmu09g0186 736 SUPERFAMILY Homeodomain-like 72 139 IPR009057 -
Cmu09g0186 736 MobiDBLite consensus disorder prediction 218 240 - -
Cmu09g0186 736 FunFam Homeobox-leucine zipper protein GLABRA 2 254 474 - -
Cmu09g0186 736 SMART HOX_1 82 144 IPR001356 GO:0003677(InterPro)
Cmu09g0186 736 Coils Coil 193 213 - -
Cmu09g0186 736 Pfam START domain 258 474 IPR002913 GO:0008289(InterPro)
Cmu09g0186 736 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu09g0186 736 FunFam Homeobox-leucine zipper protein HDG1 69 156 - -
Cmu09g0186 736 Gene3D - 253 474 IPR023393 -
Cmu09g0186 736 MobiDBLite consensus disorder prediction 76 92 - -
Cmu09g0186 736 Coils Coil 139 166 - -
Cmu09g0186 736 ProSiteProfiles START domain profile. 245 478 IPR002913 GO:0008289(InterPro)
Cmu09g0186 736 CDD START_ArGLABRA2_like 249 474 - -
Cmu09g0186 736 Pfam Homeodomain 83 138 IPR001356 GO:0003677(InterPro)
Cmu09g0186 736 SUPERFAMILY Bet v1-like 248 474 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0186 Cmu-Chr9:2022799 Cmu09g1115 Cmu-Chr9:11577959 2.00E-110 dispersed
Cmu07g1290 Cmu-Chr7:28178418 Cmu09g0186 Cmu-Chr9:2022799 4.40E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6770 PF01852 START 1.50E-51 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0186 K09338 - csv:101218545 1300.8