Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0202 ATGGCGATTGGGAATGGAACTACCACACGAATTCTTCCATTTTCCTGCTTTCTATACTGCTATTATTGCTTTATATTAGTGTTCTTTTTGGTGGAGTTTTCCCATGGCCAGTCTACACAAACCAATAATGTTCTTACACAAGGCCAAAAGCTATCAATTGGGTCTCAATTAATTTCATCCACCGCCAACTTTATGCTAGGATTTTACAATCCTTACAATTCTAATACCACTTATTTAGGAATCTCCTACAACACTAATCACCAGAAGCCAATCTGGATAGCCAATCCAAACTCCCCATTTCCCAGCAATTCCACTCCCATCAGCCTCACCATCGACGCCAACGGCAGCTTCAAAATTCAAAATGGCTATTATTCCTTTTCACTCTTCGATGTCGGGCAACCAACCACCAGCAGCGCCATATTGCAAGACGACGGCAACTTTGTACTACGAGAGCTGAACAGAGATGGATCGGTTAAGCAAATTCTGTGGCAGAGCTTTGATCATCCAACAGATACTCTGCTTCCCGGAATGAAAATTGGGATCAATCACAAAACAAACTCCACTTGGTCATTAACATCATGGAGAACCATTGAATCTCCCATGGCAGGAGCATTCACTCTGGCAATGAATCCAAACAATACATATCAATTACTGATATTTTTCAGAGGTGCTCTGTTTTGGAGCAGCGGGAATTGGAAAGACGGTTCGTTCGAATTCTTACAATATCTGTCGAATTCCGACCCTTACAACAGCAATCAAAACCAAGAAATGTATATCAATCGAATTTCGAATGAGAATGAAACGTTTTTCATTTACTACATTCCGAAATTCGATCGATCTCCCACTCCTTACGCGTATCGAAATCTATATTACCCAAAATCAGGGGAATTTGTACTACCCCAATTGAGATTAGAAGATGGTGGGAATTTGGGGATTAACGATCAGAGTTCGTACTCTGTTTGCTCCCTGTTTGAAAACGAGGATGGAGGGTGTGTGTGGAAAGAACAGCAGAAAATTCCGGAGTGCAGGAATTGGCTGTATGGGTTTAGCGAGCCATTTAGCCCGAGGTTTGGTTACATGGAGGAGGGAATTAATGGTTCTAATTACAACAAACAAAGTGGGAACTTAACCATGTTTGAATGTGAAACTATTTGCATTTTTGATTGTGATTGCATAGCTATTGGATTTAGCGATGAAGAAGATGGCACCAGCTGTGAGATTTGGAAATCAGGAGCCACGTTTAATTCAGTCTCCGCCGGTTCACGAGAGTATTTCTTTCTGGACCACACGACCCAGACCGGCCAAGTTACGGGGAAAATGAAGAGAAGCTTTGTTTGCGTGATGGGGTTCATATCCGAAGGTTTTAATATTTTAGGAATAATGATAAGACAAATAAGAGATGGGAAAAAGAATCCTGAATTGCAAATTTTTGACTTTGAAACCATTGTTTCTGCCACAAATAATTTTGGAGATGAATGTAAGCTTGGACAAGGTGGTTTTGGACCTGTTTATAAGGGAATTTTGACGGATGGCCAAGAAGTAGCCATTAAAAGATTGTCTAAGAATTCAGGACAAGGATTGGTGGAGTTCAAGAATGAAACTATTTTGATTGCTAAACTTCAACACACAAATTTGGTTAGGCTTATTGGTTGCTGCATTTATAAAGAAGAGAAATTGTTGGTGTATGAGTACATGCCCAACAAAAGCCTTGACTTCTTCCTCTTTGACTCCGAGAAGAAGTTAGCATTAAATTGGGAGAAACGTTTGCACATCATTCAAGGGATCGTTCAAGGACTACTCTACCTTCACTACTACTCAAGGGTACGAATAATTCATCGAGATTTAAAAGTCAGCAATATCTTACTCGATGATGAGATGAATGCAAAAATATCAGATTTTGGTATGGCTAGAGTGTTTAAGCCATCAGAGCATGAAGCAAATACAAGTCGAGTGGTTGGTACATATGGCTATATATCACCAGAATATGCAATGGAGGGCATTTTTTCAATAAAGTCGGACGTGTATAGCTTTGGAATATTATTGTTGGAGATCGTAACAAGTCGAAAAAACTACAACAATTATGACACAGAACGACCACTCAATCTGATAGGATACGCATGGGAATTGTGGGTGAATGGGAGAGGAGAAGAGCTGATTGATTTGGGTTTGTGCAATAACTGTGATGAGAAAGCAAAGGCTTTAAGGTGCATTCATGTTAGTCTTTTGTGCGTCCAACAAGTTCCAGCGGATAGGCCGACGATGTTGGATGTTTATTTCATGATTAATAATGATTCGACTCAACTTCCCTCTCCCAAACAACCTGCTTTTTTTGTTGCTCAAAACCCAAATTCCTCCCAACTACAACTGGTGGAGGTGGTCGATACTATGCTCATACAACCAGCTGCTGAGCCAACACTGGAAATTTCTTCATTCAATACTATGTCACTCTCACTCATGGGATTTGCGAGCCGTGAATTGCCGCGCACGAGCGATCCCTATTTGTGCTCTTCGACTCGGGCCAGTTTCTCAGCCATGTCGTCCAAGCAAGGAGGGAAGGCAAAGCCTTTGAAGCAACCCAAGGCTGAGAAGAAAGATTACGACGAGAGCACTAAAACCCACTCAGTCCGACCATCTCCAAGACCAGCTCTCGGGCCCACTTTGGAGCAGTCGTCGGTGTCTTACTATGCTTCTCTCCTCCAATCTTGCGTCGTCCGAAAGGCGATAGAGCCTGGAAAGCAGCTTCACGCTCGTATGTGGCAAATGGGTATTAGTTTCAACCCTCTCTTGGCTACTAAACTAGTCAATCTTTACTGCATCTGCAACTCTTTGATAAATGCTCATCTGTTGTTTGATAGAATTTCCAAACGAAATCTGTTCCTTTGGAATGTTATGATACGAGGTTATGCTTGGAATGGACCATATGAGGTTGCAATTTCACTTTACTACCAAATGCAAGATTATGGGCTTGTGCCCGATAAATTTACCTTCCCCTTTGTGCTCAAAGCTTGCTCGGCTCTTTCTGCCATGGAAGAGGGAAAGAAGATTCATAAAGATGTCTTACGCACTGGGTTGGAGAGCGATGTGTTTGTTGGTGCGGCCCTGATTGATATGTATGCTAAATGTGGTTGTGTAGAGAGTGCTCGACAGGTGTTTGATAAAATTGATGAGAGAGATGTTGTGTGTTGGAACTCCATGCTTGCAGCTTATTCTCAAAATGGGCAACCAGATGAGTCGCTTGCTCTCTGCAGAGTGATGGCTTTTGATGGAGTGAAGCCCACCGAGGGGACACTTGTCATCTCCATCTCAGCTTCAGCTGACAATGGCCTTCTACCTCAAGGGAAGGAGCTTCATGGTTATAGTTGGAGACATGGATTTGAATCGAATGACAAGGTGAAAACTGCATTGGTGGATATGTATGCCAAGAGTGGCTCGGTAAATGTTGCTAGGAGCTTGTTTGAGATATTGGAGGAGAAGAGGGTAGTCTCTTGGAACACCATGATCACTGGGTATGCAATGCATGGTCATGCTAATGAAGCTTTGGACCTGTTTAAGGAGATGAAAGGGAAAGCTTTACCTGATCATATAACTTTTGTTGGAGTTCTCGCTGCCTGCAGCCATGGAGGATTGCTTGATGAAGGGAAGATGTATTTCAGATCAATGGTAACTGATTACGTTATATGTCCTACTGTTCAACACTACACTTGTATGATTGATCTACTTGGTCATTGTGGTCATTTGGAAGAAGCTTACAACCTCATAATGGAAATGAGGGTAGAGCCTGATGCTGGTGTCTGGGGTGCATTGCTTCACTCATGCAAAATCCATGGCAATGTGGAGATGGGTGAGCTAGCTTTAGAGAAGTTGATTGAGCTTGAACCTGATGATGGTGGGAACTATGTGATTCTATCGAATATGTATGCTCAAGCTGGTAAATGGGAAGGAGTTGCAAGACTAAGGAATCTCATGATGGATAAGGGATTGAAGAAAAGTATTGCTTGTAGTTGGATAGAAGTGAAAAACAAAGTTCATGCCTTCTTGTCGGAAGATACTTCTCATCCTGAGTCTGAAGCAATTTATTCGGAGTTAAAACGGATAGGGAAGTTGATGAAAGAAGCTGGCTATGCACCGCAGATTGGGTCAGTTTTCCACGATGTTGAAGATGATGAAAAGGTTGATATGGTGTGTTGTCATAGTGAAAGATTGGCCATTGCTTTTGGACTCATTAGCACCCCTGTGGGAACTAAGCTCTTGATTATCAAGAACCTTCGAGTTTGTGAGGATTGCCATGTTGCAATCAAGTTCATATCGAAGATCACAGAGAGGGAAATTACTATTAGAGATGTTAATCGCTATCATCACTTCAAAGATGGACTCTGCTCTTGTGGTGATTTCTGGACGAACAATGGAAGGATTGAGGCATTGAGCAGCTACCCTTTTCGTCTTCCACCAGATGAAAAAGTGAAGGCATCAGTGGATCTGGCGAATATTCAAAAGAAGAAGGAAGAGGAAAAGGCGCTCAGGGAACTTAGAGCGAAGGCCCAACAGAAGGGGACCTTTGGAGGTTCTGGCCTGAAGAAGAGTGGGAAGAAATGA 4593 42.33 MAIGNGTTTRILPFSCFLYCYYCFILVFFLVEFSHGQSTQTNNVLTQGQKLSIGSQLISSTANFMLGFYNPYNSNTTYLGISYNTNHQKPIWIANPNSPFPSNSTPISLTIDANGSFKIQNGYYSFSLFDVGQPTTSSAILQDDGNFVLRELNRDGSVKQILWQSFDHPTDTLLPGMKIGINHKTNSTWSLTSWRTIESPMAGAFTLAMNPNNTYQLLIFFRGALFWSSGNWKDGSFEFLQYLSNSDPYNSNQNQEMYINRISNENETFFIYYIPKFDRSPTPYAYRNLYYPKSGEFVLPQLRLEDGGNLGINDQSSYSVCSLFENEDGGCVWKEQQKIPECRNWLYGFSEPFSPRFGYMEEGINGSNYNKQSGNLTMFECETICIFDCDCIAIGFSDEEDGTSCEIWKSGATFNSVSAGSREYFFLDHTTQTGQVTGKMKRSFVCVMGFISEGFNILGIMIRQIRDGKKNPELQIFDFETIVSATNNFGDECKLGQGGFGPVYKGILTDGQEVAIKRLSKNSGQGLVEFKNETILIAKLQHTNLVRLIGCCIYKEEKLLVYEYMPNKSLDFFLFDSEKKLALNWEKRLHIIQGIVQGLLYLHYYSRVRIIHRDLKVSNILLDDEMNAKISDFGMARVFKPSEHEANTSRVVGTYGYISPEYAMEGIFSIKSDVYSFGILLLEIVTSRKNYNNYDTERPLNLIGYAWELWVNGRGEELIDLGLCNNCDEKAKALRCIHVSLLCVQQVPADRPTMLDVYFMINNDSTQLPSPKQPAFFVAQNPNSSQLQLVEVVDTMLIQPAAEPTLEISSFNTMSLSLMGFASRELPRTSDPYLCSSTRASFSAMSSKQGGKAKPLKQPKAEKKDYDESTKTHSVRPSPRPALGPTLEQSSVSYYASLLQSCVVRKAIEPGKQLHARMWQMGISFNPLLATKLVNLYCICNSLINAHLLFDRISKRNLFLWNVMIRGYAWNGPYEVAISLYYQMQDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVLRTGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLAAYSQNGQPDESLALCRVMAFDGVKPTEGTLVISISASADNGLLPQGKELHGYSWRHGFESNDKVKTALVDMYAKSGSVNVARSLFEILEEKRVVSWNTMITGYAMHGHANEALDLFKEMKGKALPDHITFVGVLAACSHGGLLDEGKMYFRSMVTDYVICPTVQHYTCMIDLLGHCGHLEEAYNLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLIELEPDDGGNYVILSNMYAQAGKWEGVARLRNLMMDKGLKKSIACSWIEVKNKVHAFLSEDTSHPESEAIYSELKRIGKLMKEAGYAPQIGSVFHDVEDDEKVDMVCCHSERLAIAFGLISTPVGTKLLIIKNLRVCEDCHVAIKFISKITEREITIRDVNRYHHFKDGLCSCGDFWTNNGRIEALSSYPFRLPPDEKVKASVDLANIQKKKEEEKALRELRAKAQQKGTFGGSGLKKSGKK 1530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2101377 2110554 - CmPI595203_09g002020.1 Cmu09g0202 423431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0202 1530 Pfam Translation machinery associated TMA7 1491 1530 IPR015157 -
Cmu09g0202 1530 Pfam D-mannose binding lectin 91 195 IPR001480 -
Cmu09g0202 1530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 957 991 IPR002885 -
Cmu09g0202 1530 Gene3D Tetratricopeptide repeat domain 1222 1293 IPR011990 GO:0005515(InterPro)
Cmu09g0202 1530 Gene3D Tetratricopeptide repeat domain 1004 1113 IPR011990 GO:0005515(InterPro)
Cmu09g0202 1530 Coils Coil 1496 1516 - -
Cmu09g0202 1530 MobiDBLite consensus disorder prediction 855 874 - -
Cmu09g0202 1530 SMART blect_4 42 169 IPR001480 -
Cmu09g0202 1530 Pfam PPR repeat family 1160 1205 IPR002885 -
Cmu09g0202 1530 Pfam PPR repeat family 957 1003 IPR002885 -
Cmu09g0202 1530 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 459 564 - -
Cmu09g0202 1530 FunFam Pentatricopeptide (PPR) repeat-containing protein 1222 1384 - -
Cmu09g0202 1530 Gene3D Phosphorylase Kinase; domain 1 463 564 - -
Cmu09g0202 1530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g0202 1530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1159 1193 IPR002885 -
Cmu09g0202 1530 Gene3D Tetratricopeptide repeat domain 886 1003 IPR011990 GO:0005515(InterPro)
Cmu09g0202 1530 MobiDBLite consensus disorder prediction 845 883 - -
Cmu09g0202 1530 ProSiteProfiles Bulb-type lectin domain profile. 42 162 IPR001480 -
Cmu09g0202 1530 Pfam DYW family of nucleic acid deaminases 1373 1465 IPR032867 GO:0008270(InterPro)
Cmu09g0202 1530 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 565 769 - -
Cmu09g0202 1530 NCBIfam pentatricopeptide repeat 960 992 IPR002885 -
Cmu09g0202 1530 NCBIfam pentatricopeptide repeat 1060 1094 IPR002885 -
Cmu09g0202 1530 NCBIfam pentatricopeptide repeat 1161 1187 IPR002885 -
Cmu09g0202 1530 SUPERFAMILY Protein kinase-like (PK-like) 472 781 IPR011009 -
Cmu09g0202 1530 MobiDBLite consensus disorder prediction 1511 1530 - -
Cmu09g0202 1530 Gene3D Transferase(Phosphotransferase) domain 1 565 773 - -
Cmu09g0202 1530 SUPERFAMILY alpha-D-mannose-specific plant lectins 90 196 IPR036426 -
Cmu09g0202 1530 Pfam PPR repeat 1133 1159 IPR002885 -
Cmu09g0202 1530 Pfam PPR repeat 1033 1058 IPR002885 -
Cmu09g0202 1530 Pfam PPR repeat 1060 1089 IPR002885 -
Cmu09g0202 1530 Pfam PPR repeat 1233 1257 IPR002885 -
Cmu09g0202 1530 Gene3D - 37 167 IPR036426 -
Cmu09g0202 1530 FunFam Pentatricopeptide repeat-containing protein mitochondrial 1112 1221 - -
Cmu09g0202 1530 SMART serkin_6 489 759 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g0202 1530 CDD STKc_IRAK 495 763 - -
Cmu09g0202 1530 Pfam E motif 1275 1337 IPR046848 -
Cmu09g0202 1530 Pfam Protein tyrosine and serine/threonine kinase 493 701 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g0202 1530 Gene3D Tetratricopeptide repeat domain 1114 1221 IPR011990 GO:0005515(InterPro)
Cmu09g0202 1530 FunFam Pentatricopeptide repeat-containing protein At3g16610 969 1111 - -
Cmu09g0202 1530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1058 1092 IPR002885 -
Cmu09g0202 1530 ProSiteProfiles Protein kinase domain profile. 489 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g0202 1530 CDD B_lectin 51 169 IPR001480 -
Cmu09g0202 1530 PANTHER OS07G0578800 PROTEIN-RELATED 1058 1358 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0963 Cmu-Chr2:14234045 Cmu09g0202 Cmu-Chr9:2101377 1.90E-08 dispersed
Cmu02g1992 Cmu-Chr2:33684001 Cmu09g0202 Cmu-Chr9:2101377 9.70E-94 dispersed
Cmu05g0825 Cmu-Chr5:7469522 Cmu09g0202 Cmu-Chr9:2101377 5.00E-87 dispersed
Cmu05g1072 Cmu-Chr5:10106539 Cmu09g0202 Cmu-Chr9:2101377 2.70E-137 dispersed
Cmu06g0514 Cmu-Chr6:5704483 Cmu09g0202 Cmu-Chr9:2101377 6.90E-117 dispersed
Cmu06g1775 Cmu-Chr6:28781457 Cmu09g0202 Cmu-Chr9:2101377 1.50E-69 dispersed
Cmu07g0874 Cmu-Chr7:22024388 Cmu09g0202 Cmu-Chr9:2101377 2.30E-134 dispersed
Cmu07g1499 Cmu-Chr7:30154416 Cmu09g0202 Cmu-Chr9:2101377 1.30E-136 dispersed
Cmu08g0235 Cmu-Chr8:5289483 Cmu09g0202 Cmu-Chr9:2101377 2.70E-06 dispersed
Cmu08g0779 Cmu-Chr8:20078142 Cmu09g0202 Cmu-Chr9:2101377 4.50E-127 dispersed
Cmu09g0202 Cmu-Chr9:2101377 Cmu09g0245 Cmu-Chr9:2524808 2.10E-162 dispersed
Cmu09g0244 Cmu-Chr9:2523868 Cmu09g0202 Cmu-Chr9:2101377 3.70E-66 dispersed
Cmu10g0890 Cmu-Chr10:961636 Cmu09g0202 Cmu-Chr9:2101377 1.20E-101 dispersed
Cmu10g1427 Cmu-Chr10:8419970 Cmu09g0202 Cmu-Chr9:2101377 2.30E-122 dispersed
Cmu10g1428 Cmu-Chr10:8440837 Cmu09g0202 Cmu-Chr9:2101377 5.90E-119 dispersed
Cmu10g2609 Cmu-Chr10:32869203 Cmu09g0202 Cmu-Chr9:2101377 1.30E-116 dispersed
Cmu11g0349 Cmu-Chr11:3966270 Cmu09g0202 Cmu-Chr9:2101377 8.90E-100 dispersed
Cmu09g0202 Cmu-Chr9:2101377 Cmu03g0744 Cmu-Chr3:1610999 2.30E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75767 PF07714 PK_Tyr_Ser-Thr 3.90E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0202 - - - 0.0