Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0226 ATGAGAAAAGAAGAAAATCATATCAGGGCTAATATTGGGGAATTCCCTGGTAGAATTACACGTGCTCGGGCTGCTGCATTTAGTGCATCAGCACAGCTGCCTCCAAAAGTTCCTGCACATCATCAAGAGAGGCGGGTTGCCCGAGCTAATCTGAAAAGAGCTGCTTCTGAAGAAAATAGCTGCCATTCTATTGCTAAATCAGCTCGACCATGTAAAAGGAGGGCTGTGCTTCAGGATGTCAGCAATATAGGCTGTGAACCTTCGTACTCAAATTGTTTCAATGCAGCTAAAATTGAGCCCAATAGTAGTAAGCCGACAATCAGAAACCATCTCAAGAAGTCCAAAGGAGCCTCATCAGTTGGTGTGGCTAACTCCAAGGTTCCTCTAGGTCTTAGAACCAAAGGAGCTTCATCAGTTGGTGGGGCTTACTCCAAGCCTCTTGATCTTAGAACACAAGGTGTACAATCAAATGTCAAATCAAAAGCCAAGTTGAAAGTTGAGCATTCAAGTAATTCTGAAGACCCCGATACACATCATCGGGTAAGTGGTATAAAGGAAGAGGTCACAAGTGATTTTCGGGATGATAATTGGAGGTCTCAAAGTCCTTCAGAGTCTCAAAATTTTCAAAATAAAGATAAAGTGTTGCTTCTGGGGACAAAAAGCAACCTGGACATTGCAGACATTGATTGTAATGACAGAGATGCTCAGCTGTGCACTGTCTATGCCCAGGATATCTATAACAATTTACGTGTAGCTGAGCTAACCAGAAGACCACGTCCCAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTGTCGGAGGAATACAAGTTAGTACCAGATACACTCTACCTAACTGTTTTTTTCATCGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCTCTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCACCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTACTGAATATGGAAGGTCAAATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACATATAAGACCCCTAGTCTTGAACTCGAGTGCCTCGCCAACTATCTGGCTGAATTAACACTGGTTGACTACAGATTCCTGAATTTTCTTCCCTCAGTTATAGCTGCATCAGCTGTATTTCTTTCCAAATGGACGTTGGATCAGTCGAGTCACCCATGGAATTCAACACTGGAATATTATACCTCATATAAAGCATCAGATCTGAAACAAACTGTTGTTGCTTTACAAGATTTACAGTTGAACACCAACGGTTGTCCACTTAGTTCGATTCGTGTCAAGTATCGGCAAGAAAAGTTCAAAGCTGTTGCAACTTTGTCTTCCCCAAAATTACTTGATACGCTATTCTGA 1512 41.93 MRKEENHIRANIGEFPGRITRARAAAFSASAQLPPKVPAHHQERRVARANLKRAASEENSCHSIAKSARPCKRRAVLQDVSNIGCEPSYSNCFNAAKIEPNSSKPTIRNHLKKSKGASSVGVANSKVPLGLRTKGASSVGGAYSKPLDLRTQGVQSNVKSKAKLKVEHSSNSEDPDTHHRVSGIKEEVTSDFRDDNWRSQSPSESQNFQNKDKVLLLGTKSNLDIADIDCNDRDAQLCTVYAQDIYNNLRVAELTRRPRPNFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSQNYIERQKLQLLGISCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYRFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKQTVVALQDLQLNTNGCPLSSIRVKYRQEKFKAVATLSSPKLLDTLF 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2348197 2352927 + CmPI595203_09g002260.1 Cmu09g0226 423455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0226 503 Gene3D - 244 492 - -
Cmu09g0226 503 SMART cyclin_7 377 465 IPR013763 -
Cmu09g0226 503 SMART cyclin_7 280 364 IPR013763 -
Cmu09g0226 503 MobiDBLite consensus disorder prediction 131 208 - -
Cmu09g0226 503 Pfam Cyclin, C-terminal domain 373 495 IPR004367 -
Cmu09g0226 503 SMART Cyclin_C_2 373 496 IPR004367 -
Cmu09g0226 503 FunFam Mitotic cyclin 6 258 358 - -
Cmu09g0226 503 SUPERFAMILY Cyclin-like 373 498 IPR036915 -
Cmu09g0226 503 FunFam Cyclin A1 360 492 - -
Cmu09g0226 503 PIRSF Cyclin_A_B_D_E 35 502 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cmu09g0226 503 Gene3D - 258 371 - -
Cmu09g0226 503 CDD CYCLIN_AtCycA_like_rpt1 234 369 - -
Cmu09g0226 503 PANTHER CYCLINS 224 483 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu09g0226 503 CDD CYCLIN_AtCycA-like_rpt2 373 487 - -
Cmu09g0226 503 MobiDBLite consensus disorder prediction 101 120 - -
Cmu09g0226 503 MobiDBLite consensus disorder prediction 161 198 - -
Cmu09g0226 503 Pfam Cyclin, N-terminal domain 244 371 IPR006671 -
Cmu09g0226 503 SUPERFAMILY Cyclin-like 234 370 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1751 Cmu-Chr5:27610905 Cmu09g0226 Cmu-Chr9:2348197 1.10E-112 dispersed
Cmu08g1563 Cmu-Chr8:27421620 Cmu09g0226 Cmu-Chr9:2348197 3.30E-77 dispersed
Cmu09g0226 Cmu-Chr9:2348197 Cmu11g1856 Cmu-Chr11:30695713 9.10E-46 dispersed
Cmu08g0545 Cmu-Chr8:17436528 Cmu09g0226 Cmu-Chr9:2348197 3.20E-83 transposed
Cmu08g1228 Cmu-Chr8:24647123 Cmu09g0226 Cmu-Chr9:2348197 8.20E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0226 K06627 - csv:101222299 924.85