Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0261 ATGCTTCAAAAGAAGGGTTGCCTCCCACTACTCAATCGAATCATTGGGGTTTCAGGCTGCTTAAACTTAGAGGGTTTTCAGATGACATATTTTCCTGGTTTAAGTAATCAAAGAGACTCCATGTTAGGTGATCAGAAACTTGGTTCTTCTTGCCAAGAACAGCCTCTTTGTTCTGGGAATTTGATGATGTTCATGAATCAAGACCCTTCTTGCAGAGATTATTCAGAGATTTTTTCTGGGGTTTCTTCAAACTATGTTGAAACTGTGGGAGATAGAAGTAATGTTGAAATGGCTTTCATTCCACCAGTTGTGGGAATTTTAGATGACTCAAATTTCCAATGTCAAGGTGTTTCACTTAGCCTTTCCACACACTCACCCTCTGTTGTTTCTATGCCTTCATTTCCTCACCAATATCAGACCCCTGCTATGCCTTCTTCATTCATCAATAATGCACCTCCTTTGATCTTCGAGAAGAGGCCGAATCTGAAACCTTCTATAAATGATGCGAAAAATGGCATGTATATAGCGGTGGGTTCTGGATATTCGACATTGAATTTGGTATACATCGAAGCTGCACAGCAGTTGCTCGACGAAATGGTTAGCATCCGCGAAGCTTTGAAAGAGTTGAAGTCTAAGAAACTCAAAGCTTCCAATGGTTTGGGTGTTGATTCCTGCAGAGAAAATGATGGTGGATCTAATGATTTGACTGGGGAGATGTGTGGCAATGTGAGGCAGTCGCCGATTGCCAATCCGTCAGGGGATCTATCGCCTACCGAACGTCAGGACTTGAAGAACAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAGGCAATATTACCAACAGCTGCAATATTTGGCGTCGTCTTTTGACATGGTAGCAGGCCGAGGGGCTGCAGATTTCTACACTGCACTCGCACACCAAACTATTTCGTGCCACTTTCGCCGCTTGCGAGATGCAATCAATGCACAGATTGAGGTCACCAGGAGAACCTTGGGGGAGCAAGATGCTTTACATTCTGGTCAAGAGGGCATTCCTCGTCTCCGCTTTGTCGACCAACACCTCAGGCAACAGAGAGCTCTTCAGCAGCTTGGTGTCACGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCCGAAAGTTCCGTGTCGATTCTTCGCGCTTGGCTGTTCGAACACTTCCTCCATCCATATCCCAAGGACTCCGAGAAACTTAAGCTAGCTAGACAAACTGGCCTGACCAGAAACCAAGTCGCAAACTGGTTTATAAATGCACGTGTTCGGCTATGGAAACCAATGGTAGAGGAGATGTACAAAGAAGAATTTGGAGACTCCAACATTGACATCAAATCCTCACCAGAAAATGCATCCAAAGTATCATGGAACAATTCACTATTCTCCGAAGATAAGGGAGGAGACGAGATGCACGACAGCATGAAATCTGCAGCAAACAACGGCGAGCGAGTCCTCTACCGCCCGTGTGCTACCGACGACATGATCAACTCGAGTAACTTCTCAATGGGAGGAGGAGGAGATGTTTCACTTGCACTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGGATGTTTGGGAATAACAATAGAATGGTTGGTTCTGTGGAGCTTGAGGCACAAGATTTTCCATGTTTGGAACCAGAAAGACATCATCAATGCAGGCTCACAAGTTCAAATATGTTGCATGATTTTATTGGCCTGGATCTGTGTCGGTCTCATTCTTCCAAAACAACCACTAAGCTAAATTCAACTAACTTGCCTCCACATGCAGTGGCGGATTTTCACTCACTACTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCATCACTGTTTTCACTTCACTGCAATTTCGTCGCGAAGTGGGGGAGGTTTGAGCTTGTGCGCGTTGAAACATCGATCTCCTGTAATACGCATCATGAAACGCCCCTTTCTATCTGTTACAATGGCGAAGAAGAGATGGCCGTTGATGATCTTAGCATTGGTTTCAATTTCCACGGCAATGGTTTTCTTCATGAGGACTACGTTCGATTCTTGTAGTGGTAATGGAAATAGACGTTTTGTGGAAGAAAATGGTATCGACTCACAGATTCGTTCCTCCCAAATCGAGAGAAAAGCTCCGAATCCTCTTGATTTCATGAAGTCCAAGCTCGTCCTCTTGGTCTCACATGAGCTCTCTCTTTCTGGTGGGCCTCTACTACTCATGGAGCTTGCATTTTTGTTGAGAGGCGTCGGTACTCAAGTTGTTTGGATTACCAATCAAAAGCCATCGGAGCCTGATGAAGTAGTGTACAGTTTGGAGCGCAAGATGTTAGATCGAGGAGTGCAGGTTTTATCTGCTAAGGGACAAGAAGCTGTGGAAACCGCTCTAAAAGCTCATTTGGTTGTTCTGAATACCGCTGTTGCTGGGAAATGGTTGGATGCTGTCCTTAAGGAAAATGTTCCCCGTGTCCTTCCCAAGGTTCTGTGGTGGATTCATGAGATGCGAGGGAATTATTTCAAAGTTGAGTATGTGAAGCACCTCCCTTTTGTTGCAGGTGCTATGATTGATTCACATACAACTGCAGAATACTGGAAAAACAGAACACGGGAACGTTTAGGGATTCAAATGCCTGAAACTTATGTCGTGCATCTTGGAAATAGTAAGGACCTTATGGAAGTGGCTGAAAATAATGTGGCCAAGAGGGTTCTTCGAGAGCATATTCGTGAATTCCTTGGAGTTCGGAATGAAGATATATTGTTTGCAATTATAAATAGTGTTTCGCGTGGGAAAGGTCAGGATTTATTTCTCCGGGCCTTTCATCAGAGCTTGCAAATGATCCAAGATAAAAAGCTGCGGGTACCAAGGATACATGCAGTGGTAGTTGGCAGTGACATGAGTGCTCAAACAAAGTTTGAAACAGAACTGCGCAACTTTGTGAATGAGAATAAAATTCAGGATCGTGTTCATTTTGTCAACAAAACCCTGTCTGTGGCTCCTTATCTCGCTTCTATTGATGTTCTTGTTCAAAACTCTCAGGGTAGGGGAGAATGCTTTGGAAGGATAACCATTGAAGCCATGGCGTTTCAACTACCTGTGCTGGGCACGGCTGCTGGAGGAACAATGGAGATCGTAGTGAACGGGTCAACGGGTTTGCTGCATCCTGCAGGGAAAGAAGGTGTAACTCCACTGGCACATAACATTGTGAAGTTAGCAACACACGTCGAGCGAAGGCTGACCATCGGAAAGAAAGGATATGAGAGGGTGAGGCAAATGTTCCTGGAACAACACATGGGGCAAAGAATTGCTGTTGTTTTGAAGAAAGTTCTGGAGAAAGCAAAGAGCCACTCTAGTCATTAG 3363 44.72 MLQKKGCLPLLNRIIGVSGCLNLEGFQMTYFPGLSNQRDSMLGDQKLGSSCQEQPLCSGNLMMFMNQDPSCRDYSEIFSGVSSNYVETVGDRSNVEMAFIPPVVGILDDSNFQCQGVSLSLSTHSPSVVSMPSFPHQYQTPAMPSSFINNAPPLIFEKRPNLKPSINDAKNGMYIAVGSGYSTLNLVYIEAAQQLLDEMVSIREALKELKSKKLKASNGLGVDSCRENDGGSNDLTGEMCGNVRQSPIANPSGDLSPTERQDLKNKNSKLLSLLGEVDRRYRQYYQQLQYLASSFDMVAGRGAADFYTALAHQTISCHFRRLRDAINAQIEVTRRTLGEQDALHSGQEGIPRLRFVDQHLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNIDIKSSPENASKVSWNNSLFSEDKGGDEMHDSMKSAANNGERVLYRPCATDDMINSSNFSMGGGGDVSLALELKHCEGDEFGMFGNNNRMVGSVELEAQDFPCLEPERHHQCRLTSSNMLHDFIGLDLCRSHSSKTTTKLNSTNLPPHAVADFHSLLLLLLLLLPPHHCFHFTAISSRSGGGLSLCALKHRSPVIRIMKRPFLSVTMAKKRWPLMILALVSISTAMVFFMRTTFDSCSGNGNRRFVEENGIDSQIRSSQIERKAPNPLDFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTQVVWITNQKPSEPDEVVYSLERKMLDRGVQVLSAKGQEAVETALKAHLVVLNTAVAGKWLDAVLKENVPRVLPKVLWWIHEMRGNYFKVEYVKHLPFVAGAMIDSHTTAEYWKNRTRERLGIQMPETYVVHLGNSKDLMEVAENNVAKRVLREHIREFLGVRNEDILFAIINSVSRGKGQDLFLRAFHQSLQMIQDKKLRVPRIHAVVVGSDMSAQTKFETELRNFVNENKIQDRVHFVNKTLSVAPYLASIDVLVQNSQGRGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGSTGLLHPAGKEGVTPLAHNIVKLATHVERRLTIGKKGYERVRQMFLEQHMGQRIAVVLKKVLEKAKSHSSH 1120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2639923 2648531 + CmPI595203_09g002610.1 Cmu09g0261 423490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0261 1120 ProSiteProfiles 'Homeobox' domain profile. 373 436 IPR001356 GO:0003677(InterPro)
Cmu09g0261 1120 PANTHER GLYCOSYLTRANSFERASE 654 1117 - -
Cmu09g0261 1120 MobiDBLite consensus disorder prediction 238 258 - -
Cmu09g0261 1120 Pfam Associated with HOX 188 326 IPR006563 -
Cmu09g0261 1120 SMART HOX_1 376 440 IPR001356 GO:0003677(InterPro)
Cmu09g0261 1120 CDD homeodomain 376 437 IPR001356 GO:0003677(InterPro)
Cmu09g0261 1120 Gene3D Glycogen Phosphorylase B; 894 1094 - -
Cmu09g0261 1120 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 721 1112 - -
Cmu09g0261 1120 Pfam Homeobox KN domain 393 432 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu09g0261 1120 SMART prehox3 170 328 IPR006563 -
Cmu09g0261 1120 Pfam Glycosyl transferases group 1 907 1088 IPR001296 GO:0016757(InterPro)
Cmu09g0261 1120 FunFam UDP-Glycosyltransferase superfamily protein 896 1094 - -
Cmu09g0261 1120 CDD GT4_PimA-like 753 1104 - -
Cmu09g0261 1120 MobiDBLite consensus disorder prediction 225 262 - -
Cmu09g0261 1120 Coils Coil 189 212 - -
Cmu09g0261 1120 Gene3D - 373 450 - -
Cmu09g0261 1120 SUPERFAMILY Homeodomain-like 377 443 IPR009057 -
Cmu09g0261 1120 Pfam Glycosyl-transferase family 4 722 901 IPR041693 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1275 Cmu-Chr7:28047429 Cmu09g0261 Cmu-Chr9:2639923 2.20E-37 dispersed
Cmu09g0261 Cmu-Chr9:2639923 Cmu11g0411 Cmu-Chr11:4532079 1.40E-91 dispersed
Cmu09g0261 Cmu-Chr9:2639923 Cmu10g2559 Cmu-Chr10:32387093 2.40E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6775 PF00534 Glycos_transf_1 2.60E-20 CL0113 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0261 - - - 0.0