Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu09g0308 | ATGGCCCGACCGCAACAGCGCTATCGTGGCGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACGAGAATATGGTTAGGGACATTCGAGACGGCGGAGGATGCAGCCCGAGCTTACGACGAGGCAGCACGGCTGATGTGCGGTCCAAAGGCACGAACCAACTTCCAATATAATCCGAACGACCAACAGTCGTCGTCGTCTTCTTCCTCCTCTTCGTCCAAGCTTCTCCCCGCCGCGCTGATAGCGAAATTACATAAATGCCATTTGGCCTCACTCCAAATTGCGAAAAAACACGTCCACAGACAACACCCCGGATTCGAGCCCAACTACACCGCCTACGGCGGATCACCTCCACCGAGCATTGCCGGAACCACCGCAGGCCCGTGGACGCCGGAAGATACGTGGGTCTACTCCGACGAAGGTCAAATGGAGATGAATAACAATAATAATAATAACAACATTCATCATCAACAATGCCTTCAACCTCTTGAAGATGATCATATTGAACAAATGATACAAGAGCTGCTACATCTCGGACCATTCGAAATTATTACATAA | 582 | 50.86 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQYNPNDQQSSSSSSSSSSKLLPAALIAKLHKCHLASLQIAKKHVHRQHPGFEPNYTAYGGSPPPSIAGTTAGPWTPEDTWVYSDEGQMEMNNNNNNNNIHHQQCLQPLEDDHIEQMIQELLHLGPFEIIT | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2935563 | 2936356 | - | CmPI595203_09g003080.1 | Cmu09g0308 | 423537 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu09g0308 | 193 | MobiDBLite | consensus disorder prediction | 61 | 80 | - | - | |
Cmu09g0308 | 193 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu09g0308 | 193 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu09g0308 | 193 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 7 | 167 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cmu09g0308 | 193 | SUPERFAMILY | DNA-binding domain | 7 | 65 | IPR016177 | GO:0003677(InterPro) | |
Cmu09g0308 | 193 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu09g0308 | 193 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 65 | - | - | |
Cmu09g0308 | 193 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu09g0308 | 193 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu09g0308 | 193 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu09g0308 | 193 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g1298 | Cmu-Chr8:25240078 | Cmu09g0308 | Cmu-Chr9:2935563 | 2.10E-44 | dispersed | |
Cmu09g0308 | Cmu-Chr9:2935563 | Cmu11g0292 | Cmu-Chr11:3444758 | 9.80E-25 | dispersed | |
Cmu09g0304 | Cmu-Chr9:2903446 | Cmu09g0308 | Cmu-Chr9:2935563 | 2.30E-15 | proximal | |
Cmu08g1297 | Cmu-Chr8:25232813 | Cmu09g0308 | Cmu-Chr9:2935563 | 2.00E-40 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6778 | PF00847 | AP2 | 8.20E-12 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu09g0308 | - | - | - | 0.0 |