Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0308 ATGGCCCGACCGCAACAGCGCTATCGTGGCGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACGAGAATATGGTTAGGGACATTCGAGACGGCGGAGGATGCAGCCCGAGCTTACGACGAGGCAGCACGGCTGATGTGCGGTCCAAAGGCACGAACCAACTTCCAATATAATCCGAACGACCAACAGTCGTCGTCGTCTTCTTCCTCCTCTTCGTCCAAGCTTCTCCCCGCCGCGCTGATAGCGAAATTACATAAATGCCATTTGGCCTCACTCCAAATTGCGAAAAAACACGTCCACAGACAACACCCCGGATTCGAGCCCAACTACACCGCCTACGGCGGATCACCTCCACCGAGCATTGCCGGAACCACCGCAGGCCCGTGGACGCCGGAAGATACGTGGGTCTACTCCGACGAAGGTCAAATGGAGATGAATAACAATAATAATAATAACAACATTCATCATCAACAATGCCTTCAACCTCTTGAAGATGATCATATTGAACAAATGATACAAGAGCTGCTACATCTCGGACCATTCGAAATTATTACATAA 582 50.86 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQYNPNDQQSSSSSSSSSSKLLPAALIAKLHKCHLASLQIAKKHVHRQHPGFEPNYTAYGGSPPPSIAGTTAGPWTPEDTWVYSDEGQMEMNNNNNNNNIHHQQCLQPLEDDHIEQMIQELLHLGPFEIIT 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2935563 2936356 - CmPI595203_09g003080.1 Cmu09g0308 423537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0308 193 MobiDBLite consensus disorder prediction 61 80 - -
Cmu09g0308 193 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0308 193 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0308 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 167 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cmu09g0308 193 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
Cmu09g0308 193 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0308 193 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cmu09g0308 193 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0308 193 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0308 193 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0308 193 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1298 Cmu-Chr8:25240078 Cmu09g0308 Cmu-Chr9:2935563 2.10E-44 dispersed
Cmu09g0308 Cmu-Chr9:2935563 Cmu11g0292 Cmu-Chr11:3444758 9.80E-25 dispersed
Cmu09g0304 Cmu-Chr9:2903446 Cmu09g0308 Cmu-Chr9:2935563 2.30E-15 proximal
Cmu08g1297 Cmu-Chr8:25232813 Cmu09g0308 Cmu-Chr9:2935563 2.00E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6778 PF00847 AP2 8.20E-12 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0308 - - - 0.0