Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0329 ATGATTTGTGACAAGAAAGCGATTATACCTCGCCAATCTTCCTATAACTCTCTGTATTTGAATCCACTTACCGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGCGGATTCCGGCAAGGTAAAGAAAACTTAATTCCTAATACGAAGGATAAACAGAGAGATGAAAATGCAGTGTTTTGCGACAAAGAAAATGCGATTCCCATTAATGGGTTTTGTGCTAATTCAAAGCAGCAATTTGGGGATTTGAAGTCATTTTCGACTGGAAAGGCTTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAACGAACCCGATAAGGTTTTTGCCTCTAGATTGTGGGATGCCACTGATTCTGAACATTCAAGTTCTTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCCACTTTGCCAAACAGGTCATTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTGCATGGTGGAGCCTTCTATTCTCTATACACCAATGAAGGGAAGGGGCGGCAGGATCGGAAGTTGGCGGTGGCTCGCCATCGACGACGGAATGGGAGGTCAGAGTATAAAATAGCTCAGAGTACGAGGGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACCACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGGAGCCATCTGAAACCAATCCCGAGCAAGTCAAGATCGCTTCTGGCTGCTGTAACATTCATGCCTACAATAACTACTTGGACAGGCAGCCATAGGAGCATGAAGGCTTTCATCCCCAAGCATCAATCAATGCTGCTAAAAAACACCAATCAGGTGCAACACATAGCAGGGCTGCCAAAGGAGTGGGAGGAAGAAAAGGCCAAAGTCCACCAGCTTGTTTCTAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAATTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAAACCTCGGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGTAAACAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGTCTGGCTTCCATAGATTCAAAGCTGTGTTGCTCAGTTGGTTGGTGA 1227 44.34 MICDKKAIIPRQSSYNSLYLNPLTDLRHNRSCSDGGGFRQGKENLIPNTKDKQRDENAVFCDKENAIPINGFCANSKQQFGDLKSFSTGKALKPSSLHLCMQMNEPDKVFASRLWDATDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSTRGILCNADDSFVGSMTTNLVGSKYHIWDQGSHLKPIPSKSRSLLAAVTFMPTITTWTGSHRSMKAFIPKHQSMLLKNTNQVQHIAGLPKEWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSVGW 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3150997 3155349 + CmPI595203_09g003290.1 Cmu09g0329 423558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0329 408 MobiDBLite consensus disorder prediction 32 51 - -
Cmu09g0329 408 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Cmu09g0329 408 PRINTS Tubby superfamily signature 227 251 IPR000007 -
Cmu09g0329 408 PRINTS Tubby superfamily signature 362 381 IPR000007 -
Cmu09g0329 408 PRINTS Tubby superfamily signature 383 405 IPR000007 -
Cmu09g0329 408 PANTHER TUBBY-RELATED 126 404 - -
Cmu09g0329 408 SUPERFAMILY Tubby C-terminal domain-like 139 404 IPR025659 -
Cmu09g0329 408 Gene3D Tubby Protein; Chain A 144 405 IPR025659 -
Cmu09g0329 408 Pfam Tub family 151 400 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0647 Cmu-Chr8:18687510 Cmu09g0329 Cmu-Chr9:3150997 2.20E-10 dispersed
Cmu09g0329 Cmu-Chr9:3150997 Cmu05g1935 Cmu-Chr5:29236522 1.80E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6780 PF01167 Tub 3.40E-45 CL0395 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0329 K19600 - csv:101216780 783.097