Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0330 ATGGCGAAGATCTCACATCCTTCGCACAACAATTCCATTTCCTCCACTGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATATTAACGTACCGAGCCGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCGCTGCCTACGACAAAGCGGCCATAGAATACCGCGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATAAAATGCCTCCGTCCTGGGGAACAGAATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGGCGAAACTACGTCACAATTGGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTCGCAATGTTCGAGCTCCGGCCAACCTGCCACCGAGCCACTGCCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCAATTCCTCAAAATTTAAAGACATAATAGAAAGAACATCCGCCGCCGAGGCTCCACAGACGCCGCCGGAATCTGACCGGCCGCGCCGCTGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTTGATGCTTAA 1089 49.59 MAKISHPSHNNSISSTANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNSWNEGQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRAELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQNIPNNNNRPPNPNAGETTSQLDPNSLLGFTFPSQCSSSGQPATEPLPEPGDGDSSSSSAALELLLNSSKFKDIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPSSVFHCELDA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3157584 3163845 - CmPI595203_09g003300.1 Cmu09g0330 423559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0330 362 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0330 362 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0330 362 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0330 362 FunFam AP2-like ethylene-responsive transcription factor 151 212 - -
Cmu09g0330 362 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0330 362 MobiDBLite consensus disorder prediction 222 266 - -
Cmu09g0330 362 MobiDBLite consensus disorder prediction 1 51 - -
Cmu09g0330 362 MobiDBLite consensus disorder prediction 220 280 - -
Cmu09g0330 362 CDD AP2 151 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0330 362 Pfam AP2 domain 151 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0330 362 Pfam AP2 domain 49 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0330 362 Gene3D AP2/ERF domain 50 118 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0330 362 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0330 362 FunFam AP2-like ethylene-responsive transcription factor 49 118 - -
Cmu09g0330 362 SMART rav1_2 152 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0330 362 SMART rav1_2 50 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0330 362 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 36 238 - -
Cmu09g0330 362 MobiDBLite consensus disorder prediction 1 25 - -
Cmu09g0330 362 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677(InterPro)
Cmu09g0330 362 SUPERFAMILY DNA-binding domain 49 117 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1325 Cmu-Chr6:24394508 Cmu09g0330 Cmu-Chr9:3157584 1.30E-110 dispersed
Cmu09g0330 Cmu-Chr9:3157584 Cmu10g2244 Cmu-Chr10:28540564 1.30E-73 dispersed
Cmu09g0330 Cmu-Chr9:3157584 Cmu05g2265 Cmu-Chr5:32048980 7.60E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6781 PF00847 AP2 2.40E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0330 K09285 - csv:101206499 601.282