Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0340 ATGGCTGTTGAATCAAACCAAACTAACGAATTCATTTTCCGTTCAAAGCTTCCCCATATTCACATTCCCAATCATCTCCCACTCCACGAATACGTTTTCCAAAATCTCCCCAAATTTGCCTCACGCCCCTGTTTGATCAACGGCGCCACCGGCGATGTTTACTCCTACAGCGACCTTCACCTAACGGCCCGTCGAGTCGCCGCCGGCCTACACAGCCTCGGAATTAATAAGGGCGACGTCGTCATGAATTTGCTTCCCAACTCCCCGGAGTTCGTCTTCACCTTCCTCGCCGCGTCGTACCGGGGCGCCATCATGACGGCGGCGAACCCTTTTTACACGGCAGTGGAAATTGCAAAACAGGCCAAAGCCGCCAATGCGAAGTTGATCGTGACCATGGCTTGCTTCTACGATCGGGTTAAGGATTTGGCTGAAAATGGTGTGAAAATTGTATGCGTTGATTTTGCTGTCGAGGGTTGTTTGCATTTCTCTGTTTTGAGTGGGGCTGATGAATCTAATGCGCCGCCGGTGGATTTTTCCCCTGACGACGTGGTGGCGCTGCCGTACTCCTCCGGCACCACCGGTTTGCCGAAGGGAGTCATGTTAACTCACAAAGGGCTAATCACAAGCGTGGCTCAACAAATGGACGGCCAAAATCCGAACCTCTATTATCACGGCGACGATGCTATCCTCTGTGTGCTGCCGTTTTTCCACATTTATTCACTCAATTCCATTTTGCTGTGTGGGCTACGCGTCGGTGCTGCGATTGTGATTATGCAGAAATTTGACATCGTTTCTCTCTTGCAATTGATTGAGAAATACAGAATCTCGATCATGCCCATCGTCCCGCCGATCTTTTTGGCCATTGCTAAGTCGCCGGAATTTGAGAAATACGACGTGTCGTCAGTGAGGGTTCTCAAATCCGGTGGAGCTCCACTGGGGAAGGAGCTGGAAGACGCCGTGCGGGAGAAATTTCCGGCGGCGGTTCTCGGACAGGGGTATGGAATGACCGAGGCCGGTCCGGTTCTGAGCATGAGTTTAGCTTTTGCGAAAGAGCCGTTCGAAGTGAAAGCCGGAGCTTGTGGAACTGTGGTCCGAAATGCAGAGATGAAGATTGTCGACCCAGAAACCGGCGCGTCCTTGCCGGCGAATTCGGCCGGAGAGATTTGTATTAGAGGTGATCAGATCATGAAGGGGTATTTGAATGATTTGGAGTCAACAAAGAGGACTATTGATAAAGAAGGATGGCTTCACACCGGTGACATAGGGTTCGTGGACGACGACGATGAGCTTTTCATCGTGGACCGGCTTAAGGAACTAATCAAATTCAAGGCCTTTCAGGTGGCACCTGCGGAGCTGGAGGCCCTTCTTATCACCCACCCAAAACTAAGTGACGCTGCCGTTATTGGTATGCCGGATGTGGAGGCAGGAGAAGTGCCAGTGGCATTTGTGGTGAAGGCGAACGGTGGCGCTATAACAGAGGAAGAGGTAAAGCAATTCATAACAAAACAAGTGGTGTTCTACAAGAGGCTAAAACGTGTGTTTTTTGTCAACGCTATTCCAAAGGCTCCGTCTGGCAAAATCCTCAGAAAAGAACTCAGAGCAAAATTGGCTTCTGCTGCTTACAATTAA 1629 50.4 MAVESNQTNEFIFRSKLPHIHIPNHLPLHEYVFQNLPKFASRPCLINGATGDVYSYSDLHLTARRVAAGLHSLGINKGDVVMNLLPNSPEFVFTFLAASYRGAIMTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHFSVLSGADESNAPPVDFSPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQMDGQNPNLYYHGDDAILCVLPFFHIYSLNSILLCGLRVGAAIVIMQKFDIVSLLQLIEKYRISIMPIVPPIFLAIAKSPEFEKYDVSSVRVLKSGGAPLGKELEDAVREKFPAAVLGQGYGMTEAGPVLSMSLAFAKEPFEVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDIGFVDDDDELFIVDRLKELIKFKAFQVAPAELEALLITHPKLSDAAVIGMPDVEAGEVPVAFVVKANGGAITEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILRKELRAKLASAAYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3258736 3260467 + CmPI595203_09g003400.1 Cmu09g0340 423569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0340 542 SUPERFAMILY Acetyl-CoA synthetase-like 15 538 - -
Cmu09g0340 542 CDD 4CL 22 532 - -
Cmu09g0340 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Cmu09g0340 542 Pfam AMP-binding enzyme 37 400 IPR000873 -
Cmu09g0340 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Cmu09g0340 542 Gene3D - 3 436 IPR042099 -
Cmu09g0340 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
Cmu09g0340 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Cmu09g0340 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 437 - -
Cmu09g0340 542 Gene3D - 437 539 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1391 Cmu-Chr6:25068067 Cmu09g0340 Cmu-Chr9:3258736 1.50E-206 dispersed
Cmu09g0340 Cmu-Chr9:3258736 Cmu10g2044 Cmu-Chr10:26208718 2.00E-224 dispersed
Cmu09g0339 Cmu-Chr9:3251650 Cmu09g0340 Cmu-Chr9:3258736 0.00E+00 tandem
Cmu09g0340 Cmu-Chr9:3258736 Cmu09g0341 Cmu-Chr9:3268661 1.60E-290 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0340 K01904 - csv:101218121 1004.59