Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0364 ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCCAAGCCCTTCCGCTTCGTCGAGAAGCAACCGCAAGTACCGCCGCCACAGCGAGTTCTTTCCCGGCCAGATTTAGGGTTCTGTGTCGACTTGTCGATTGGCCGTCCGTTTGTCGGAGAGAAAGAAGACGACGAAGAAAAACCTAATCAGAGAGAAGATGAATCCGACGCTAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCATAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGATGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGACTATACGGCGGCGGAGGAAACATTTCCTGCCGGAGAGATCAAATTGAAAATGGCGTAATGAACGAAGTAGGTGAATCTGGAAGAGCGTCTTCTAGAGCTAGCGATGAAGACGAAAATGGCTGTACGAGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTCCTTGAAGAAAGCTTCAAAGAACACAACACTTTAAACCCTAAACAGAAGCTAGCACTGGCTAAGCAACTGAATCTTCTTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGGGCTAGGACGAAATTGAAGCAAACGGAAGTGGATTGCGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACAACGAACTCATTCTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTAACCTCAACTTCCGCCGCTTCCACCGTCGCTGCCGTCGCCACCAGTGGAGGCAAATCGACGGAGGGAGTTTCAAAACGATCTGGGTTCGCCATTGCTGGCCGACCCAGTTCTTCCTCTTTCCCATTTTCTGCTAAAACGCAGTCCCACCAGTCAACAGCTTCATGA 1002 48.9 MELGLSLGDAPKPFRFVEKQPQVPPPQRVLSRPDLGFCVDLSIGRPFVGEKEDDEEKPNQREDESDANEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISCRRDQIENGVMNEVGESGRASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTSAASTVAAVATSGGKSTEGVSKRSGFAIAGRPSSSSFPFSAKTQSHQSTAS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3512101 3513348 + CmPI595203_09g003640.1 Cmu09g0364 423593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0364 333 SMART halz 222 265 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0364 333 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677(InterPro)
Cmu09g0364 333 Gene3D - 170 220 - -
Cmu09g0364 333 MobiDBLite consensus disorder prediction 292 333 - -
Cmu09g0364 333 CDD homeodomain 166 223 IPR001356 GO:0003677(InterPro)
Cmu09g0364 333 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu09g0364 333 SUPERFAMILY Homeodomain-like 159 223 IPR009057 -
Cmu09g0364 333 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0364 333 SMART HOX_1 164 226 IPR001356 GO:0003677(InterPro)
Cmu09g0364 333 MobiDBLite consensus disorder prediction 46 68 - -
Cmu09g0364 333 MobiDBLite consensus disorder prediction 310 333 - -
Cmu09g0364 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 57 290 IPR050762 -
Cmu09g0364 333 MobiDBLite consensus disorder prediction 1 32 - -
Cmu09g0364 333 FunFam Homeobox-leucine zipper protein HAT22 170 216 - -
Cmu09g0364 333 Coils Coil 228 258 - -
Cmu09g0364 333 Pfam Homeodomain 166 220 IPR001356 GO:0003677(InterPro)
Cmu09g0364 333 MobiDBLite consensus disorder prediction 46 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0364 Cmu-Chr9:3512101 Cmu10g2673 Cmu-Chr10:33529430 6.70E-13 dispersed
Cmu01g0583 Cmu-Chr1:6315552 Cmu09g0364 Cmu-Chr9:3512101 2.40E-35 transposed
Cmu01g1736 Cmu-Chr1:31093573 Cmu09g0364 Cmu-Chr9:3512101 1.10E-53 transposed
Cmu06g1449 Cmu-Chr6:25754493 Cmu09g0364 Cmu-Chr9:3512101 4.90E-41 transposed
Cmu07g0686 Cmu-Chr7:12646462 Cmu09g0364 Cmu-Chr9:3512101 1.10E-34 transposed
Cmu10g1087 Cmu-Chr10:3100103 Cmu09g0364 Cmu-Chr9:3512101 1.40E-51 transposed
Cmu10g1637 Cmu-Chr10:16923987 Cmu09g0364 Cmu-Chr9:3512101 3.00E-51 transposed
Cmu10g2032 Cmu-Chr10:26100208 Cmu09g0364 Cmu-Chr9:3512101 1.70E-46 transposed
Cmu10g2496 Cmu-Chr10:31622757 Cmu09g0364 Cmu-Chr9:3512101 3.20E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6783 PF00046 Homeodomain 4.90E-15 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0364 K09338 - csv:101221600 577.785