Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0385 ATGGCGAAGACTAGGGCTCATGAGCTATCGCGAGCGTTAGCAGGTGATACATGCACAATTCGGCTGACTGAAATTTTCGGGAGGGCGACCAAGTCTATTTTGGGCTTCTTTATCATGGTGGGTCTTTGCAATGGCGTGCATTACCTTTTGAGGCCATTTTCTCAACCTCGCATTACCTCTGATACGATCGTAGGTTTGGCTGTTGGCAACTTCATAAGGAAGGAACTTGATATATCAACGATTAAGACGCTGCGTTATATCGTCGACTTTGGTATGATATGCTATATGTTTGTGCTGGGATTGGAGGTGGATCCATATGTACTCTTCAAAGCACCTACACGTGATGCTAAGGTAGCTTATGCTGGAATGATTTCGACACTCATCTTAGCCTGTTCCATAATCCCATTTATTAGCTTTGCAAAGTCAAAAGAGATCAGTTTCATAATCTCCCTCTCAACTGTCCTCTCTAGCACTGCTTCTCCTGTACTAACCCGTTTGATTACCAGTCTTAAAATCGGTAGGTCAGATATAGGCCAGCTCGTCATTGCTGCCGGAATGCATTCTGATTTTATATCCACTCTCATGATCTGTATTGGTTATCTCTTTTGCAAATGCCAAGAGACACGCATCTCCCTTATAAAAGGTTTTCAATTAGGTATTCTATTATTGATCCAGTCAGTACTGACAGCGAAGGTTTCACCGGTATTCATGAACTGGGTAAATAATGAAAACCCCGAGGGTAAACCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGCGGTTGCCCTACTGTATTTGGTTACAATCCGATTCTCAGTGCATTTTTAGCTGGAACATTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAACTACCTGCTTACTACCGTTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATCCAAGTTGAGTGACTTTGAACCTGGACAAATAATGACATGGATTAGGTTAATTCTGCTTTTTGCTATTGTAACCGTAGGAAAAGTTGTTGGTACTGTCATTGCTGGGGCAATTTTGGGGTTCCATTGGCCTGAATCAGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATATACTTGGCTATTGCTGCAAAAACAGCTGGAAAGATAACTACATCTACGAGCTTGGTGATGGTAATTGTAATCTTCTTCACAGTCGTGCATGCTCCAAAAGTTGTAGCACATATAATCAAGAGGGCAAGGAAACGCACACCTACACATCGAATGGCTCTCCAATTGCTTGATCCATCAAGTGAGCTTAAGATCTTGTTATGTATACATGGACCTCAGAACACTGCAGCAGCCATTAACATCATGGAGATTTCTCGGGGGACAGCTAACCCTGGAGTTGTTGTATATGTCACAGACATGATTGAACTTACAGATGAAATAGCATCCACATTAGTTCAAGGTGAAGGAGTGGACACCGTGACTGTAACCCACACAGGAGTGACACAAATGAGAGACCAAGTTACTTCTGCAGTTCAGAGCTATGTAGATGAAAATGGAGAAGGGATTACTCTTAGGAGAATGTTAGCTCTCTCAACATTCAATTCTATGGCTCAGGACATTTGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTCCACAAGAGCCAGCGTGGAGATGGGTCGTTGAGTGAGGGCCAAGCAGCTTTCCGATATGTAAACCGCAAGGTTCTCAGGCATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTGGAGAAAATTTCGAGGTCGTATGTATCTCAAAGTGTGGCAGTCATCTTCATTGGCGGTAAAGATGACCGAGAAGCATTAGCCTATGCCGGTCGAGTAGCAAGGCATCCCGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCTGGGACTTACAGGATAAGTGTTGCTGAGCAGGAAGAGGAAATGAGACAAGACGATGAATGCTTTGCCTATTTTTACGAAAGGCATGTGGCTGGTGGGCACGTTGCGTACGTTGAAAAACACCTGGCCAGTTCCTCCGAGACGTATTCTACTTTGAAATCACTGGAAGGGCAATACGCCCTCATAATCGTAGGTCGAGGTGGGAAGGTCAACTCGGTGTTAACTTTTGGGATGAATGACTGGCAACAGTGTCCAGAACTGGGTCCTATAGGGGACATTCTTTCCGGGTCTGAATTCTCTGTTAGGACCTCAGTTTTGATCATCCATCAACACAATCTAAAAGGAGAACTAGATGGACTTGATGATGACTTTTCAATTATGTAG 2373 43.95 MAKTRAHELSRALAGDTCTIRLTEIFGRATKSILGFFIMVGLCNGVHYLLRPFSQPRITSDTIVGLAVGNFIRKELDISTIKTLRYIVDFGMICYMFVLGLEVDPYVLFKAPTRDAKVAYAGMISTLILACSIIPFISFAKSKEISFIISLSTVLSSTASPVLTRLITSLKIGRSDIGQLVIAAGMHSDFISTLMICIGYLFCKCQETRISLIKGFQLGILLLIQSVLTAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCGCPTVFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVESKLSDFEPGQIMTWIRLILLFAIVTVGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAAKTAGKITTSTSLVMVIVIFFTVVHAPKVVAHIIKRARKRTPTHRMALQLLDPSSELKILLCIHGPQNTAAAINIMEISRGTANPGVVVYVTDMIELTDEIASTLVQGEGVDTVTVTHTGVTQMRDQVTSAVQSYVDENGEGITLRRMLALSTFNSMAQDICILAEELMGALIILPFHKSQRGDGSLSEGQAAFRYVNRKVLRHAPCSVGILVDRGLGSVEKISRSYVSQSVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEEEMRQDDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSLEGQYALIIVGRGGKVNSVLTFGMNDWQQCPELGPIGDILSGSEFSVRTSVLIIHQHNLKGELDGLDDDFSIM 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3718482 3722226 + CmPI595203_09g003850.1 Cmu09g0385 423614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0385 790 PANTHER CATION/H + ANTIPORTER 37 775 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Cmu09g0385 790 Pfam Sodium/hydrogen exchanger family 49 419 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cmu09g0385 790 Gene3D - 443 743 - -
Cmu09g0385 790 Gene3D - 29 429 IPR038770 -
Cmu09g0385 790 FunFam Cation/H(+) antiporter 28 30 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0385 K26731 - - csv:101211645 1475.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0385 Cmu-Chr9:3718482 Cmu09g1218 Cmu-Chr9:13996707 1.80E-85 dispersed
Cmu09g0385 Cmu-Chr9:3718482 Cmu07g0526 Cmu-Chr7:6150214 2.70E-60 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu02g0055 . 4 797 Antiporter Super Family AT2G13620 72.4 0.0e+00 1151.0
Cmu07g0762 . 11 785 Antiporter Super Family AT2G13620 50.4 4.0e-208 721.8
Cmu04g0873 . 78 848 Antiporter Super Family AT3G53720 68.9 3.3e-289 991.1
Cmu07g0770 . 83 779 Antiporter Super Family AT3G53720 50.6 4.9e-184 641.7
Cmu07g0768 . 83 768 Antiporter Super Family AT3G53720 50.1 1.7e-181 633.3
Cmu07g0762 . 83 782 Antiporter Super Family AT3G53720 50.3 2.3e-181 632.9
Cmu07g0770 . 1 779 Antiporter Super Family AT5G41610 70.0 1.0e-309 1059.3
Cmu07g0768 . 4 771 Antiporter Super Family AT5G41610 68.1 1.7e-299 1025.4
Cmu07g0762 . 1 785 Antiporter Super Family AT5G41610 66.7 1.9e-295 1011.9
Cmu07g0760 . 57 836 Antiporter Super Family AT5G41610 65.0 1.1e-287 986.1
Cmu04g0873 . 10 822 Antiporter Super Family AT5G41610 51.0 3.5e-209 725.3
Cmu07g0768 . 8 788 Antiporter Super Family AT4G23700 65.2 9.2e-290 993.0
Cmu07g0762 . 10 802 Antiporter Super Family AT4G23700 63.8 2.0e-284 975.3
Cmu07g0760 . 67 834 Antiporter Super Family AT4G23700 63.2 5.1e-280 960.7
Cmu07g0770 . 9 779 Antiporter Super Family AT4G23700 63.5 5.6e-279 957.2
Cmu07g0770 . 5 779 Antiporter Super Family AT3G17630 63.9 2.2e-272 935.3
Cmu07g0762 . 9 783 Antiporter Super Family AT3G17630 62.4 1.5e-268 922.5
Cmu07g0768 . 4 788 Antiporter Super Family AT3G17630 61.4 3.3e-268 921.4
Cmu07g0760 . 63 834 Antiporter Super Family AT3G17630 61.2 1.0e-261 899.8
Cmu04g0873 . 10 824 Antiporter Super Family AT3G17630 51.3 2.8e-206 715.7
Cmu07g0762 . 11 785 Antiporter Super Family AT1G64170 57.6 1.1e-239 826.6
Cmu07g0768 . 3 772 Antiporter Super Family AT1G64170 57.9 4.3e-239 824.7
Cmu07g0770 . 15 782 Antiporter Super Family AT1G64170 57.1 7.9e-233 803.9
Cmu07g0760 . 68 836 Antiporter Super Family AT1G64170 56.8 1.9e-231 799.3
Cmu02g0055 . 4 797 Antiporter Super Family AT2G13620 72.4 0.0e+00 1151.0
Cmu07g0762 . 11 785 Antiporter Super Family AT2G13620 50.4 4.0e-208 721.8
Cmu07g0762 . 11 785 Antiporter Super Family AT1G64170 57.6 1.1e-239 826.6
Cmu07g0768 . 3 772 Antiporter Super Family AT1G64170 57.9 4.3e-239 824.7
Cmu07g0770 . 15 782 Antiporter Super Family AT1G64170 57.1 7.9e-233 803.9
Cmu07g0760 . 68 836 Antiporter Super Family AT1G64170 56.8 1.9e-231 799.3
Cmu07g0768 . 8 788 Antiporter Super Family AT4G23700 65.2 9.2e-290 993.0
Cmu07g0762 . 10 802 Antiporter Super Family AT4G23700 63.8 2.0e-284 975.3
Cmu07g0760 . 67 834 Antiporter Super Family AT4G23700 63.2 5.1e-280 960.7
Cmu07g0770 . 9 779 Antiporter Super Family AT4G23700 63.5 5.6e-279 957.2
Cmu07g0770 . 1 779 Antiporter Super Family AT5G41610 70.0 1.0e-309 1059.3
Cmu07g0768 . 4 771 Antiporter Super Family AT5G41610 68.1 1.7e-299 1025.4
Cmu07g0762 . 1 785 Antiporter Super Family AT5G41610 66.7 1.9e-295 1011.9
Cmu07g0760 . 57 836 Antiporter Super Family AT5G41610 65.0 1.1e-287 986.1
Cmu04g0873 . 10 822 Antiporter Super Family AT5G41610 51.0 3.5e-209 725.3
Cmu07g0770 . 5 779 Antiporter Super Family AT3G17630 63.9 2.2e-272 935.3
Cmu07g0762 . 9 783 Antiporter Super Family AT3G17630 62.4 1.5e-268 922.5
Cmu07g0768 . 4 788 Antiporter Super Family AT3G17630 61.4 3.3e-268 921.4
Cmu07g0760 . 63 834 Antiporter Super Family AT3G17630 61.2 1.0e-261 899.8
Cmu04g0873 . 10 824 Antiporter Super Family AT3G17630 51.3 2.8e-206 715.7
Cmu04g0873 . 78 848 Antiporter Super Family AT3G53720 68.9 3.3e-289 991.1
Cmu07g0770 . 83 779 Antiporter Super Family AT3G53720 50.6 4.9e-184 641.7
Cmu07g0768 . 83 768 Antiporter Super Family AT3G53720 50.1 1.7e-181 633.3
Cmu07g0762 . 83 782 Antiporter Super Family AT3G53720 50.3 2.3e-181 632.9
Cmu09g0385 . 47 790 Antiporter Super Family AT3G52080 54.3 1.2e-233 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008009 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34