Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0397 ATGTGGAGACCATGTTGGGAAGACCGTCGAGGACCATGCTATGAGTACGAGAGAAAAGATGGTAATCAGTCTTGTCCTCAATGCAAAAGCAGATACAAGAGGCACAAAGGAAGTCCTGCTGTTCTTGGTGATGAAGAGGCTGCTGAGCTTGATGACGATGATGATGCGAATGATTTAAATTACATTTCTGAAAGCCAAAAAGAGAAGCAGAAGATTGTGGAGCGAATGATGAGCTGGCAGGTGTCATATGGGCAAGCACAAGATCTCCGACCTCCGAATTATGACAAAGAAGTTTCTTTAAATCACATTCCATTGCTCACCAATGGGCAGGAGGTTTCTGGAGAACTTTCAGCTGCATCACCCGAGCATCATTTGATGGCATCTCCTGGACATCCTCGTGGGAAGCCAATATATTCTCTTCCTTATGCAGCTGATATTAACCAATCACCTAACGTGCGAGGTGTGGACCCTACAAAAGAGTATAATTCGTCGGGGCTAGGCAATGTAGCTTGGAAGGAGAGAGTTGATGGCTGGAAGATGAAACAGGAGAAGAATGCTGGACCAATGAGCACAGCCCATGCTGCATCTGAAAGGGGAGGTGGAGATATTGATGCCTGCACAGATGTGCTTGTTGACGACTCCTTACTAAATGATGAAGCTCGCCAGCCTCTTTCACGAAAGGTTTCTATTCCATCATCTAGGATAAACCCTTACCGAATGGTGATTGTTCTGCGGCTTGTAATTCTTTGTTTTTTCTTGCACTACCGAATCACAAATCCAGTACGCAATGCATATGCTCTATGGCTGATATCTGTTATATGTGAGATTTGGTTTGCAATATCCTGGATATTAGATCAGTTCCCGAAGTGGCTTCCTGTAAACCGTGAGACATATCTAGATCGACTTGCATTAAGATATGATAGGGAAGGGGAACCATCACAGCTTGCTGCTGTTGACATTTTTGTGAGTACTGTCGACCCACTGAAGGAGCCTCCACTTGTCACAGCCAACACTGTACTATCTATTCTTGCTGTTGACTACCCGGTTGACAAGGTCTCGTGCTATGTTTCTGATGATGGAGCTGCCATGTTGACATTTGAAGCATTATCCGAAACATCAGAGTTTGCAAGGTCATGGGTGCCTTTCTGCAAGAAACACAGCATTGAGCCTCGGGCTCCAGAATGGTACTTCGCTCAGAAAATTGATTACTTGAAGGATAAAGTCGATCCATCATTTGTCAAAGATCGAAGAGCAATGAAGAGAGAATACGAGGAATTTAAGGTCCGCATCAACGGCTTGGTATCAAAGGCACAAAAGATTCCCGAAGAAGGATGGGTCATGCAAGATGGAACTCCGTGGCCTGGAAATAATACTAGAGACCATCCAGGAATGATCCAGGTTTTCCTAGGCCAAAACGGTGGACTGGATTCCGATGGTAATGAGTTGCCTCGTTTAGTCTATGTATCTCGTGAAAAACGTCCAGGATTCCAACATCATAAGAAAGCTGGTGCAATGAATGCTCTTGTTCGAGTGTCTGCTGTTCTTACCAATGGCCCATTCTTGTTGAATCTTGACTGTGATCACTACATAAACAACAGCAAGGCGTTAAGAGAAGCAATGTGTTTCATGATGGATCCAAACCTTGGCAAATACGTCTGTTATGTTCAGTTTCCTCAAAGATTTGACGGTATTGATAAGAACGATCGATATGCCAACCGTAATACCGTGTTCTTTGATATAAATTTAAGAGGTTTAGATGGCCTTCAAGGTCCAGTTTATGTGGGTACTGGATGTGTCTTCAACAGAACTGCACTGTATGGTTATGAACCTCCTCACAAACCAAAGCATCGGAAAACAGGATTTCTGTCTTCACTCTGTGGTGGTTCTCGAAAGAAGAATTCAAAATCAAGCAAAACAAGTCCAGACAAGAAGAAATCAAGCAGGCACGTGGACCCGACAGTGCCAATTTTCAATCTCGACGACATTGAAGAAGTGGTTGAAGGTGCTGGATTTGATGATGAGAAGTCCTTGTTAATGTCACAAATGACCCTGGAGCAAAGGTTTGGCCAGTCCTCTGTTTTTGTTGCCTCAACCCTTATGGAAAATGGCGGCGTTCCTCAATCGGCAACGCCCGAGTCTCTTCTAAAGGAGGCTATTCATGTTATCAGCTGTGGATATGAAGACAAAACAGACTGGGGATCCGAGATTGGATGGATTTATGGCTCTGTCACTGAAGATATTCTTACAGGATTCAAGATGCATGCCCGTGGTTGGCGGTCAATTTATTGTATGCCACAACGTCCTGCTTTTAAAGGGTCTGCGCCTATTAATCTTTCAGATCGATTAAACCAAGTGCTTCGATGGGCCCTCGGTTCGGTGGAGATTCTTCTGAGTAGGCATTGCCCTATCTGGTATGGTTATGGTGGAAGGCTCAAATGGCTCGAAAGGTTCGCATATGTGAACACTACGATCTATCCGATCACTGCAGTTCCTCTTCTCATGTATTGTACCTTGCCAGCTGTGTGTCTGCTGACGAACAAGTTCATCATTCCCCAGATTAGTAACGTTGCAAGTATATGGTTTATAGCCCTCTTTCTCTCCATCTTTGCGACGGGCATTCTCGAGATGAGATGGAGCGGGGTTGGGATCGACGAGTGGTGGAGAAACGAACAATTTTGGGTCATTGGAGGTGTTTCAGCTCACCTGTTTGCTGTTTTCCAAGGTCTGCTCAAGGTTCTTGCCGGTATCGACACCAACTTTACGGTCACATCCAAGGCGTCTGACGAAGACGGAGACTATGCTGAGCTTTACATGTTCAAATGGACGACTCTTCTCATCCCACCAACTACACTCCTCATCGTAAACTTGGTAGGGGTCGTAGCAGGAATATCTTACGCAATCAACAGTGGATACCAATCATGGGGACCACTGTTTGGCAAGCTATTTTTCGCTTTCTGGGTGATCATTCATCTCTATCCATTCTTGAAAGGTTTGATGGGTCGCCAAAATAGAACACCCACCATTGTCGTCGTGTGGTCGATTCTGCTTGCTTCCATCTTCTCGTTGCTATGGGTGAGGATCAATCCGTTCACTACAACAGTCATAGGGCCCGACGTCGAGGAGTGTGGAATCAACTGCTAG 3141 45.11 MWRPCWEDRRGPCYEYERKDGNQSCPQCKSRYKRHKGSPAVLGDEEAAELDDDDDANDLNYISESQKEKQKIVERMMSWQVSYGQAQDLRPPNYDKEVSLNHIPLLTNGQEVSGELSAASPEHHLMASPGHPRGKPIYSLPYAADINQSPNVRGVDPTKEYNSSGLGNVAWKERVDGWKMKQEKNAGPMSTAHAASERGGGDIDACTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCFFLHYRITNPVRNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARSWVPFCKKHSIEPRAPEWYFAQKIDYLKDKVDPSFVKDRRAMKREYEEFKVRINGLVSKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDSDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTALYGYEPPHKPKHRKTGFLSSLCGGSRKKNSKSSKTSPDKKKSSRHVDPTVPIFNLDDIEEVVEGAGFDDEKSLLMSQMTLEQRFGQSSVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPQRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYVNTTIYPITAVPLLMYCTLPAVCLLTNKFIIPQISNVASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDYAELYMFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRINPFTTTVIGPDVEECGINC 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3817256 3822828 + CmPI595203_09g003970.1 Cmu09g0397 423626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0397 1046 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 225 1015 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cmu09g0397 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 57 IPR013083 -
Cmu09g0397 1046 SUPERFAMILY RING/U-box 12 53 - -
Cmu09g0397 1046 Pfam Zinc-binding RING-finger 12 47 IPR027934 -
Cmu09g0397 1046 MobiDBLite consensus disorder prediction 18 56 - -
Cmu09g0397 1046 FunFam Cellulose synthase 435 609 - -
Cmu09g0397 1046 SUPERFAMILY Nucleotide-diphospho-sugar transferases 332 868 IPR029044 -
Cmu09g0397 1046 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 460 609 IPR029044 -
Cmu09g0397 1046 MobiDBLite consensus disorder prediction 635 650 - -
Cmu09g0397 1046 Pfam Cellulose synthase 318 1038 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cmu09g0397 1046 MobiDBLite consensus disorder prediction 611 652 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0396 Cmu-Chr4:12608437 Cmu09g0397 Cmu-Chr9:3817256 0.00E+00 dispersed
Cmu05g1733 Cmu-Chr5:27489601 Cmu09g0397 Cmu-Chr9:3817256 0.00E+00 dispersed
Cmu09g0397 Cmu-Chr9:3817256 Cmu11g1148 Cmu-Chr11:21710662 0.00E+00 dispersed
Cmu09g0397 Cmu-Chr9:3817256 Cmu02g0903 Cmu-Chr2:11686605 2.00E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0397 K10999 - csv:101206590 2035.0