Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu09g0403 | ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATTCCTCTTCCTTCTTATCTTCCTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCACCCTCTTCCTCCTCCTCCTCCTCCTCCTCCGCCGTCTTCGCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTTTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGCAGTTTCGATGACGAATCTGCCGCTCTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTTTCATTCCTTCTCGCCGGACCCTGGCACCGGGAAAATCCTCGACGGTGACATATCCGACCACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCCACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCGCAATACAGGAAAGGCCCAGAATCACTCAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCGACAACCCACGGTCGCGGCCGCTCAAGGATTTCCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGAATCAAGCCCTTCACTTGTAGAAAATGCACCAAGGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGCGGCAAGATTTGGTATTGCTTTTGTGGCTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAGGCCTTTGGTCACGGCCATGGCGCCCTCGGTCTTGACTACTTTGATGACGACAATGAACCCTCTCCTGAACTCCAACTCCAACACCAATCACAACACGGCCTCTTCCTCCATCTTCATTAA | 930 | 52.47 | MTDPNYSNSFNFIPLPSYLPPSNFPFSQCRHPLPPPPPPPPPSSPPQALPLLNTLSPETADHPSSSTTTCSFDDESAALALDFSLSCPSSDLDSSFHSFSPDPGTGKILDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFDDDNEPSPELQLQHQSQHGLFLHLH | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3882760 | 3885872 | + | CmPI595203_09g004030.1 | Cmu09g0403 | 423632 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu09g0403 | 309 | FunFam | Zinc finger protein WIP2 | 194 | 276 | - | - | |
Cmu09g0403 | 309 | MobiDBLite | consensus disorder prediction | 27 | 48 | - | - | |
Cmu09g0403 | 309 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 224 | 248 | - | - | |
Cmu09g0403 | 309 | MobiDBLite | consensus disorder prediction | 26 | 69 | - | - | |
Cmu09g0403 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 143 | 163 | IPR013087 | - | |
Cmu09g0403 | 309 | MobiDBLite | consensus disorder prediction | 49 | 69 | - | - | |
Cmu09g0403 | 309 | SMART | c2h2final6 | 251 | 274 | IPR013087 | - | |
Cmu09g0403 | 309 | SMART | c2h2final6 | 225 | 245 | IPR013087 | - | |
Cmu09g0403 | 309 | SMART | c2h2final6 | 141 | 163 | IPR013087 | - | |
Cmu09g0403 | 309 | PANTHER | ZINC FINGER PROTEIN WIP2 | 122 | 299 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER) | |
Cmu09g0403 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 208 | 245 | IPR036236 | - | |
Cmu09g0403 | 309 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 141 | 168 | IPR013087 | - | |
Cmu09g0403 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 134 | 163 | IPR036236 | - | |
Cmu09g0403 | 309 | Gene3D | Classic Zinc Finger | 203 | 276 | - | - | |
Cmu09g0403 | 309 | Gene3D | Classic Zinc Finger | 140 | 163 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu09g0403 | Cmu-Chr9:3882760 | Cmu10g2462 | Cmu-Chr10:31211233 | 7.70E-88 | dispersed | |
Cmu02g2312 | Cmu-Chr2:36662979 | Cmu09g0403 | Cmu-Chr9:3882760 | 5.70E-90 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6787 | PF00096 | zf-C2H2 | 0.0016 | CL0361 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu09g0403 | - | - | - | 0.0 |