Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0403 ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATTCCTCTTCCTTCTTATCTTCCTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCACCCTCTTCCTCCTCCTCCTCCTCCTCCTCCGCCGTCTTCGCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTTTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGCAGTTTCGATGACGAATCTGCCGCTCTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTTTCATTCCTTCTCGCCGGACCCTGGCACCGGGAAAATCCTCGACGGTGACATATCCGACCACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCCACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCGCAATACAGGAAAGGCCCAGAATCACTCAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCGACAACCCACGGTCGCGGCCGCTCAAGGATTTCCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGAATCAAGCCCTTCACTTGTAGAAAATGCACCAAGGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGCGGCAAGATTTGGTATTGCTTTTGTGGCTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAGGCCTTTGGTCACGGCCATGGCGCCCTCGGTCTTGACTACTTTGATGACGACAATGAACCCTCTCCTGAACTCCAACTCCAACACCAATCACAACACGGCCTCTTCCTCCATCTTCATTAA 930 52.47 MTDPNYSNSFNFIPLPSYLPPSNFPFSQCRHPLPPPPPPPPPSSPPQALPLLNTLSPETADHPSSSTTTCSFDDESAALALDFSLSCPSSDLDSSFHSFSPDPGTGKILDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFDDDNEPSPELQLQHQSQHGLFLHLH 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3882760 3885872 + CmPI595203_09g004030.1 Cmu09g0403 423632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0403 309 FunFam Zinc finger protein WIP2 194 276 - -
Cmu09g0403 309 MobiDBLite consensus disorder prediction 27 48 - -
Cmu09g0403 309 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 224 248 - -
Cmu09g0403 309 MobiDBLite consensus disorder prediction 26 69 - -
Cmu09g0403 309 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Cmu09g0403 309 MobiDBLite consensus disorder prediction 49 69 - -
Cmu09g0403 309 SMART c2h2final6 251 274 IPR013087 -
Cmu09g0403 309 SMART c2h2final6 225 245 IPR013087 -
Cmu09g0403 309 SMART c2h2final6 141 163 IPR013087 -
Cmu09g0403 309 PANTHER ZINC FINGER PROTEIN WIP2 122 299 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cmu09g0403 309 SUPERFAMILY beta-beta-alpha zinc fingers 208 245 IPR036236 -
Cmu09g0403 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Cmu09g0403 309 SUPERFAMILY beta-beta-alpha zinc fingers 134 163 IPR036236 -
Cmu09g0403 309 Gene3D Classic Zinc Finger 203 276 - -
Cmu09g0403 309 Gene3D Classic Zinc Finger 140 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0403 Cmu-Chr9:3882760 Cmu10g2462 Cmu-Chr10:31211233 7.70E-88 dispersed
Cmu02g2312 Cmu-Chr2:36662979 Cmu09g0403 Cmu-Chr9:3882760 5.70E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6787 PF00096 zf-C2H2 0.0016 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0403 - - - 0.0