Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0533 ATGGCTGCCAGAACAACCACCGCCGCCGCCTTCTACTTTCTCATCCTCATTTCCCTTTACATTTCCACTTCCGCCGCCCCCACCGGTTCAGTATGCAGCTCGACTCGAGACCCATCCTACTGCAAATCGGTTCTCCCGAATCAAACCGGCAATGTCTACTCGTACGGACGGTCGTCGTTCAGAAAGTCACTGTCGTCGTCGCAGAAATTCCTCCGGCTGGTGGAGAAATACCTCAGGTCCCGATCGTCGCTGACAGTGCCGGCGGTGAGGGCGCTGGAGGACTGCCAGCTGCTGGCGGGACTGAACATTGATTACTTAACGACGTCGTTCCGGGCGGTGAACTCGACGAGCAGAACGTTGCCGGAGATGAAGGCGGACGACGTGCAGAGTCTGCTGAGTGCGATATTGACGAATCAACAGACTTGTTTGGATGGAATTAAGGCGACGGCGGGTTCTTGGTCGCTCAAAAATGGCCTTTCTCTCCCACTTGCTGCTGACACCAAGCTCTACTCTCTGTCCTTGGCCTTCTTTACCAAAGGTTGGGTTCCAAAGAAGAAGAAAAAACCGACATGGAAAGCCGCCGGAAGACAAGGGAGGTTCAGAAATGGGCGAATGTCACTCAAAATGTCCAGCCGAACCAAAGCGATCTACGAGACGGCGACCCGCCGGAATCTGTTGCAGATCGATGACGGCGGCGACGACCAGATTGCGGTCAGGGACATCGTCGTTGTCAGTCAAGACGGCAGCGGAAATTTCACCACCATCAATGAGGCGATTGCGGCGGCGCCGAACAACTCTGCTCCGTCCGACGGGTATTTCTTAATCTTCGTGTCGGCCGGAATTTATGAAGAATATGTGTCGATTGCGAAGAACAAGAGGTACTTGATGATGATCGGAGATGGCATTAATCAGACCGTCGTCACCGGTAATCGGAGTGTCGTTGACGGCTGGACCACCTTCAATTCCGCCACGTTTGCGGTGGTCGGACCTGGATTCGTAGCAGTAAACATGACATTCAGAAACACCGCCGGCGCCATAAAGCATCAAGCCGTAGCCGTCCGGAATGGCGCCGACTTATCAACATTCTACCTCTGCAGCTTCGAAGCCTACCAAGACACCTTATACACCCATTCCCTCCGCCAATTCTACCGCGACTGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAACATTTACCCACGCCTCCCGATGTCCAACCAGTTCAACGCCATCACCGCCCAGGGCCGGACCGACCCAAATCAGAACACCGGCACCTCCATCTACAACTGCCGAATCACGGCAGCCGACGATCTGGCCAACAACAGCGGCGCCGGCGTCAAGACGTTCCTAGGGCGGCCGTGGAAGGAATACTCAAGGACGGTTTATATGCAGAGCTTTATGGATGATTTGATTGATCCGGAGGGATGGAGGGCTTGGAATGGGGATTTTGCTTTGAACACTTCGTATTATGCTGAATTTGGGAATTTTGGGCCGGGATCTAACACATCGGAGAGGGTTAATTGGCCGGGATTTCATTTGATTAATGATACCGATGCTGGCAATTTCACGGCGGGGAATTTTGTGTTGGCCGACGATTGGCTGCCGCAGACCGGCGTTCCCTATACCAGCGGCCTCACGGACTAG 1674 54.36 MAARTTTAAAFYFLILISLYISTSAAPTGSVCSSTRDPSYCKSVLPNQTGNVYSYGRSSFRKSLSSSQKFLRLVEKYLRSRSSLTVPAVRALEDCQLLAGLNIDYLTTSFRAVNSTSRTLPEMKADDVQSLLSAILTNQQTCLDGIKATAGSWSLKNGLSLPLAADTKLYSLSLAFFTKGWVPKKKKKPTWKAAGRQGRFRNGRMSLKMSSRTKAIYETATRRNLLQIDDGGDDQIAVRDIVVVSQDGSGNFTTINEAIAAAPNNSAPSDGYFLIFVSAGIYEEYVSIAKNKRYLMMIGDGINQTVVTGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMSNQFNAITAQGRTDPNQNTGTSIYNCRITAADDLANNSGAGVKTFLGRPWKEYSRTVYMQSFMDDLIDPEGWRAWNGDFALNTSYYAEFGNFGPGSNTSERVNWPGFHLINDTDAGNFTAGNFVLADDWLPQTGVPYTSGLTD 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4885348 4889048 - CmPI595203_09g005330.1 Cmu09g0533 423762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0533 557 Pfam Plant invertase/pectin methylesterase inhibitor 30 175 IPR006501 GO:0004857(InterPro)
Cmu09g0533 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Cmu09g0533 557 FunFam Pectinesterase 29 179 - -
Cmu09g0533 557 SMART PMEI_2 22 176 IPR006501 GO:0004857(InterPro)
Cmu09g0533 557 Pfam Pectinesterase 242 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu09g0533 557 Gene3D - 236 555 IPR012334 -
Cmu09g0533 557 CDD PMEI-like_3 30 178 - -
Cmu09g0533 557 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cmu09g0533 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Cmu09g0533 557 PANTHER PECTINESTERASE 10 546 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu09g0533 557 SUPERFAMILY Pectin lyase-like 237 554 IPR011050 -
Cmu09g0533 557 FunFam Pectinesterase 235 555 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2264 Cmu-Chr5:32037136 Cmu09g0533 Cmu-Chr9:4885348 4.00E-151 dispersed
Cmu09g0533 Cmu-Chr9:4885348 Cmu10g0854 Cmu-Chr10:588442 1.60E-104 dispersed
Cmu09g0533 Cmu-Chr9:4885348 Cmu09g0534 Cmu-Chr9:4907670 6.80E-111 tandem
Cmu02g0113 Cmu-Chr2:1263820 Cmu09g0533 Cmu-Chr9:4885348 3.60E-160 transposed
Cmu11g1453 Cmu-Chr11:26756742 Cmu09g0533 Cmu-Chr9:4885348 6.20E-170 transposed
Cmu06g0482 Cmu-Chr6:5397785 Cmu09g0533 Cmu-Chr9:4885348 4.70E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0533 K01051 - csv:101205321 1003.43