Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0534 ATGTTTGGCCTCAAAAACAGAGCTCAAATCCCTTCAAATCCCACCTCCATTTCCACCATTTCTACATTCTTCTTCATTTTCTTCCTCTTCTCCTTCAAACCCATTTCTTCAAATCCCCAAATCCACCAAACCGCTCGATCCCTTTGCAATGGCACTCTGTTTCCAAACCTCTGTTTCTCAAAGCTCTCTTCTTTTCCCCAATTGGCTTCCCTCTCGCCGCAAAAGCTCGCCGGCAGCGCCCTCAACTTCACTGCCCGCGAGGTCCTCGATGCCTACGCCAATTGCACCAAGCTCAAGACTCACCTTTACTGTGGCCTGAATCCCACCGACCGTCGGGCCCTCGATGACTGTCTTGAGCTTCTCGACGGCAGCATTGCCGAGCTCAAAGCTTCGATCTGCGATCTAGCGCCGCCGCAGTCCGCTGCCCGTCACTCCCATGATCTGTTGACATTGGTCAGCGCCGCCATGACTAACCACCGGACTTGTGTTGATGGGTTTTATAATAGTTCTGGGACTGTGAGGAGACGGGTGGAGCAGTATTTGGGGAAAATTGGACAGCATTTAAGTATTGATTTGGCGATGTTGAAGAAAATCCCTGGAGTTAATAGGGGTGCGGCGGCAGGGGAGGTGTTGCCTGAGTATGGGGCGGTGAAAGGTGGGTTTCCAAAGTGGGTTTCGGTTAAGGATCGGAGATTGTTGCAGGCGGCGGTGAATGAGACGAATTTTAATTTGGTGGTGGCGAAGGATGGCTCTGGGAATTTCACCACTGTCGGTGAGGCCGTCGCCGCCGCTCCGAATTCGAGCACCACCAGGTTTGTAATATACATAAAAGCAGGGGCTTATTTTGAGAACGTGGAAATAGAAAGGGCAAAGGCAAACTTGATGTTTATCGGCGACGGTATCGGAAAGACGCTGATAAAAGGTGACCGGAACGTCGTAGACGGCTGGACTACTTTCCGATCAGCCACCGTGGCGGTGGTTGGCACCGGGTTCATAGCAAAAGGCATAACATTTGAAAACTACGCGGGTCCAAGCAAGCACCAAGCCGTAGCCTTACGAAGCAATTCCGACTTCTCTGCATTTTACCAATGCAGCTTCGTTGGGTATCAAGACACTCTCTACGTTCACTCCCTCCGTCAATTCTACCGCGAATGCGATATCTACGGTACCATCGACTTTATCTTTGGTAACGCTGCTGTCGTTTTCCAAAATTGCAACCTTTATGCTCGAAAACCCAACCCTAACCAACGCAACATATTCACTGCCCAAGGTCGTGAGGACCCTAACCAAAACACAGGAATCTCAATCCTCAATTGTAAGGTTGAAGCCGCTGCCGATCTAATCCCCGTTCTTTCCTCGTTCAAAACTTACTTGGGCCGACCCTGGAAGTTGTACTCGAGGACCGTTTTTCTCCGGTCGTTTATTGGCCAATTGGTTGACCCGGCCGGGTGGCTTGAGTGGAACGGGACGTTTGCGTTGGATACTTTGTATTATGGGGAGTATTTGAACCGTGGGCCCGGTTCGAATGTGACTGGACGAGTTACTTGGCCGGGGTATCGGGTCATTGCTAATGCGACGGAAGCGAGCCAGTTTACGGTTGAGGGGTTTATACAGGGTAGCTCGTGGTTGAACTCAACCGGGATTCCTTTCTTCTCTGGTTTGGCTTGA 1668 50.84 MFGLKNRAQIPSNPTSISTISTFFFIFFLFSFKPISSNPQIHQTARSLCNGTLFPNLCFSKLSSFPQLASLSPQKLAGSALNFTAREVLDAYANCTKLKTHLYCGLNPTDRRALDDCLELLDGSIAELKASICDLAPPQSAARHSHDLLTLVSAAMTNHRTCVDGFYNSSGTVRRRVEQYLGKIGQHLSIDLAMLKKIPGVNRGAAAGEVLPEYGAVKGGFPKWVSVKDRRLLQAAVNETNFNLVVAKDGSGNFTTVGEAVAAAPNSSTTRFVIYIKAGAYFENVEIERAKANLMFIGDGIGKTLIKGDRNVVDGWTTFRSATVAVVGTGFIAKGITFENYAGPSKHQAVALRSNSDFSAFYQCSFVGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNPNQRNIFTAQGREDPNQNTGISILNCKVEAAADLIPVLSSFKTYLGRPWKLYSRTVFLRSFIGQLVDPAGWLEWNGTFALDTLYYGEYLNRGPGSNVTGRVTWPGYRVIANATEASQFTVEGFIQGSSWLNSTGIPFFSGLA 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4907670 4913947 + CmPI595203_09g005340.1 Cmu09g0534 423763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0534 555 Pfam Plant invertase/pectin methylesterase inhibitor 46 194 IPR006501 GO:0004857(InterPro)
Cmu09g0534 555 SUPERFAMILY Pectin lyase-like 241 553 IPR011050 -
Cmu09g0534 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 200 IPR035513 -
Cmu09g0534 555 FunFam Pectinesterase 237 554 - -
Cmu09g0534 555 CDD PMEI-like_3 47 200 - -
Cmu09g0534 555 Gene3D - 237 554 IPR012334 -
Cmu09g0534 555 Pfam Pectinesterase 243 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu09g0534 555 PANTHER PECTINESTERASE 21 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu09g0534 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 199 IPR035513 -
Cmu09g0534 555 SMART PMEI_2 40 194 IPR006501 GO:0004857(InterPro)
Cmu09g0534 555 NCBIfam pectinesterase inhibitor domain 20 197 IPR006501 GO:0004857(InterPro)
Cmu09g0534 555 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0042 Cmu-Chr1:347287 Cmu09g0534 Cmu-Chr9:4907670 7.10E-138 dispersed
Cmu01g2158 Cmu-Chr1:34211739 Cmu09g0534 Cmu-Chr9:4907670 7.20E-121 dispersed
Cmu05g1001 Cmu-Chr5:9241125 Cmu09g0534 Cmu-Chr9:4907670 3.10E-133 dispersed
Cmu07g1407 Cmu-Chr7:29305664 Cmu09g0534 Cmu-Chr9:4907670 2.70E-131 dispersed
Cmu09g0534 Cmu-Chr9:4907670 Cmu10g0854 Cmu-Chr10:588442 2.10E-128 dispersed
Cmu09g0533 Cmu-Chr9:4885348 Cmu09g0534 Cmu-Chr9:4907670 6.80E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0534 K01051 - csv:101205557 999.964