Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu09g0586 | ATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATACTAACAATAATAATCATGATGCATGA | 480 | 44.79 | MDENTGMSERLVEFKYDFSGGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA | 159 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5362615 | 5363094 | - | CmPI595203_09g005860.1 | Cmu09g0586 | 423815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu09g0586 | 159 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 81 | 97 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu09g0586 | 159 | SUPERFAMILY | Histone-fold | 47 | 156 | IPR009072 | GO:0046982(InterPro) | |
Cmu09g0586 | 159 | FunFam | Nuclear transcription factor Y subunit B-3 | 41 | 159 | - | - | |
Cmu09g0586 | 159 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 50 | 114 | IPR003958 | - | |
Cmu09g0586 | 159 | Gene3D | Histone, subunit A | 42 | 159 | IPR009072 | GO:0046982(InterPro) | |
Cmu09g0586 | 159 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 41 | 149 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Cmu09g0586 | 159 | PRINTS | CCAAT-binding transcription factor subunit A signature | 97 | 115 | - | - | |
Cmu09g0586 | 159 | PRINTS | CCAAT-binding transcription factor subunit A signature | 78 | 96 | - | - | |
Cmu09g0586 | 159 | PRINTS | CCAAT-binding transcription factor subunit A signature | 116 | 134 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu03g2288 | Cmu-Chr3:31575913 | Cmu09g0586 | Cmu-Chr9:5362615 | 6.40E-31 | dispersed | |
Cmu06g1566 | Cmu-Chr6:26886063 | Cmu09g0586 | Cmu-Chr9:5362615 | 4.50E-12 | dispersed | |
Cmu09g0586 | Cmu-Chr9:5362615 | Cmu10g1240 | Cmu-Chr10:5304306 | 1.30E-38 | dispersed | |
Cmu09g0586 | Cmu-Chr9:5362615 | Cmu02g1376 | Cmu-Chr2:27393942 | 5.10E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6802 | PF00808 | CBFD_NFYB_HMF | 6.80E-27 | CL0012 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu09g0586 | K08065 | - | csv:101204763 | 275.018 |