Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0586 ATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATACTAACAATAATAATCATGATGCATGA 480 44.79 MDENTGMSERLVEFKYDFSGGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5362615 5363094 - CmPI595203_09g005860.1 Cmu09g0586 423815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0586 159 ProSitePatterns NF-YB/HAP3 subunit signature. 81 97 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0586 159 SUPERFAMILY Histone-fold 47 156 IPR009072 GO:0046982(InterPro)
Cmu09g0586 159 FunFam Nuclear transcription factor Y subunit B-3 41 159 - -
Cmu09g0586 159 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
Cmu09g0586 159 Gene3D Histone, subunit A 42 159 IPR009072 GO:0046982(InterPro)
Cmu09g0586 159 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 41 149 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cmu09g0586 159 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Cmu09g0586 159 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Cmu09g0586 159 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2288 Cmu-Chr3:31575913 Cmu09g0586 Cmu-Chr9:5362615 6.40E-31 dispersed
Cmu06g1566 Cmu-Chr6:26886063 Cmu09g0586 Cmu-Chr9:5362615 4.50E-12 dispersed
Cmu09g0586 Cmu-Chr9:5362615 Cmu10g1240 Cmu-Chr10:5304306 1.30E-38 dispersed
Cmu09g0586 Cmu-Chr9:5362615 Cmu02g1376 Cmu-Chr2:27393942 5.10E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6802 PF00808 CBFD_NFYB_HMF 6.80E-27 CL0012 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0586 K08065 - csv:101204763 275.018