Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0610 ATGGATCCAATGGCTTTTCTGTCGCAATTGGGGCTGAAAGCAGACCGGGAAGCGGCTCACTTCACGTTTTTTGCGGTGCTACTCTTTGTCTGTTATCTAATTGTTCGTCTTTTTGAGAAGAAACGTTGGCTGAATGAGTCAATTACTTCCCTAGCTATTGGAATTTTCACTGGAATTATCGTTCTCCTAACGACTAGAGGAAAAAGTTCTCACATCCTAGAATTCAATGAACAGCTTTTCTTCATTTACCTTCTTCCACCCATAATATTTAATGCTGGGTTTCAGGTGAAGAAGAAACAGTTCTTTCGCAACTTTCTGGCAATCTTATTGTTTGGTGCTTTTGGAAGTGTGATATCATTCTTCATCATATCACTAGGTTCCCTCAACTTATTCAAGATATTGGATGTTGGCTCAGTAGACACGCAGGATTGTTTTGCACTCGGAGCAATCTTAACAGCGACAGATAGTGTTTGCACCTTGCAAGTTCTTAAACAAGATGAGACACCTTTACTTTATAGTCTGGTCTTTGGGGAAGGTGTGGTCAATGATGCTACCTCTGTGGTACTCTTCAATGCAATCAAGAAATTTGACCTCTCTCACATCACTTCAACAAATGCCATTCGGTTAGCTGGAAGTTTCTTAGGTTTGTTCTTGGGAAGCACACTACTGGGAATTGCAGTTGGGCTGCTATGTGCATTTATAATAAAGAAGCTATCCTTAGGCAGGCACCCTACAGATTATGAAGTTGTTCCGATGATTTTGATGGCCTACCTTTCATATATGATTGCTGAATTGTTGCTTCTTAGTGGTATTCTTAGCGTGTTCTTTTGTGGGATTGTCATGTCTCACTACACATCTTGGAATAATAGGACTGACAGTACCAATAATGGGATTGGCAGTTCCAGACTAATACCACGCCATGCTTTTGCGACATTATCTTTCGTAGCAGAGATCTTCATCTTCCTTTATGTTGGTATGGATGCATTGGATATTGAGAAGTGGAATGTTGTTAGAGAAAGGCCTGGGAAATCAGTTGGAGCAAGTCTTATACTGCTAGGCCTTGTTCTTGTTGGAAGAGCAGCTTTTGTATTCCCACTCTCTTTCGTTTCCAACTTGACCAGAAAGCACAAAAAAGACCATATTGGGTTTAAACAACAGTTTACGATTTGGTGGGCTGGGCTCATGAGAGGTGCTGTATCAGTGGCACTTGCCTATCATCAGTTTGCAAGGTCAGAAGAAAAGGAACAAGGGGCTTCGATAATGATAACTAGCACCATCATAATTGTTCTCTTCACAAACGTGGTGTTTGGATTGTTGACCAAGTCCATAGTAAGACGAATGATTCCTCGAATTAACCACGAGTCAAGACATTTATATTTTCCCTTACTTCAAGAAATGAGTGATTCGTTGCTTGATGAGAATGATATTGAATCCGACACCAACGAACTTAACCAACTTCCTCCAGACAGTTTCCTGTCGTTTATGAAATCTCCAACTCAATGTCTCCATTATTATTGGTACAAGTTTGATGATTGCTTCATGCGTCCTGTTTTTGGAGGGAGTGAATCTTCATTGGAGCATCTCACTCCCTCAGCTTCTCCCTGA 1605 40.93 MDPMAFLSQLGLKADREAAHFTFFAVLLFVCYLIVRLFEKKRWLNESITSLAIGIFTGIIVLLTTRGKSSHILEFNEQLFFIYLLPPIIFNAGFQVKKKQFFRNFLAILLFGAFGSVISFFIISLGSLNLFKILDVGSVDTQDCFALGAILTATDSVCTLQVLKQDETPLLYSLVFGEGVVNDATSVVLFNAIKKFDLSHITSTNAIRLAGSFLGLFLGSTLLGIAVGLLCAFIIKKLSLGRHPTDYEVVPMILMAYLSYMIAELLLLSGILSVFFCGIVMSHYTSWNNRTDSTNNGIGSSRLIPRHAFATLSFVAEIFIFLYVGMDALDIEKWNVVRERPGKSVGASLILLGLVLVGRAAFVFPLSFVSNLTRKHKKDHIGFKQQFTIWWAGLMRGAVSVALAYHQFARSEEKEQGASIMITSTIIIVLFTNVVFGLLTKSIVRRMIPRINHESRHLYFPLLQEMSDSLLDENDIESDTNELNQLPPDSFLSFMKSPTQCLHYYWYKFDDCFMRPVFGGSESSLEHLTPSASP 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5598790 5604340 + CmPI595203_09g006100.1 Cmu09g0610 423839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0610 534 PANTHER SODIUM/HYDROGEN EXCHANGER 20 525 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Cmu09g0610 534 Pfam Sodium/hydrogen exchanger family 27 445 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cmu09g0610 534 Gene3D - 139 192 - -
Cmu09g0610 534 PRINTS Na+/H+ exchanger signature 93 107 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu09g0610 534 PRINTS Na+/H+ exchanger signature 108 116 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu09g0610 534 PRINTS Na+/H+ exchanger signature 79 90 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu09g0610 534 PRINTS Na+/H+ exchanger signature 148 158 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0531 Cmu-Chr6:5886007 Cmu09g0610 Cmu-Chr9:5598790 1.40E-161 dispersed
Cmu09g0610 Cmu-Chr9:5598790 Cmu09g1999 Cmu-Chr9:36062740 7.20E-134 dispersed
Cmu09g0609 Cmu-Chr9:5585183 Cmu09g0610 Cmu-Chr9:5598790 9.20E-174 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0610 - - - 0.0