Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu09g0639 | ATGTTTTGCTGCAGCAATCAATGGAGTCGAGTACAGGCTTCGGAATCTGAAATTGGAATCTGCTATTGCTTGTCGAGGATGCTTCCGTGGGGAGGTCTTAGTTGCTGTTTGAGTGCAGCTGCTCTTTATCTTCTTGGAAGGAGTAGTGGCCGGGATGCGGAGTTACTGAAATCTGCCACGCGGGTCAATCAGTTGAAGGAATTGGCTCAATTGCTTGAGGCAGAATGTCTATTACCTCTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTGATACACCAATAAATTGCGAATTTAGTGGGTTAAGGGGTGTAATTGTGGAGGAAACGGCAGAACAACACTTTTTAAAGCACAATGATGCAGGATCATGGATTCAGGATTCTGCATTGATGCTCTCCATGAGTAAAGAAGTTCCTTGGTATCTGGATGATGGGACTGGTCGTGCATTTGTGGTAGGAGCTCGAAATGCCACAAATTTTATATTACCAGTAGTGAGTGAGGTTTTTGAAGAGTCTGGCAGATCCCTTATGCGTGGCACTTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATAGAACGCGTTCTACCTACTGGTACTTCCTTGACTGTTGTTGGTGAGCTGACAAGATGTATGCCGAAGCCATCTTCCTTCCCTTCTGATAGAAAGTCTGCAAAGTTTTTCAATGACTGGTGCCACTTTGCTTGGTATTTTGAGGAGGGTCAAACAATAAGTTGGGAGGCTGCCAAAGATGACATTGGTACCATCAGAATTCAACGTCCACACAAAGGACCATTTTATGTCTCCCCAAAAACTATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCCATGGGTTTGGGTATATTTGGTTTGTATCTGGTCACAAAGCATGCTATTCTTTATCTCATGGAGAGAAGGCGTCGCTGGGAATTGCAGAAAAGGGTCCTTGCTGCAGCTGCCAAAAGATCAAGCCAAGAAAATGAAGGGGAAAATGAAAAGGCCAGCAATGGAACAGATGGTACAAAGAGAGACCGGTCAATGCCAGATCTTTGTGTAATATGTCTCGAGAGAGACTACAATGCTGTTTTTGTCCCGTGCGGCCATATGTGCTGCTGTGTAGCATGTTGTTCACATTTAACAAACTGTCCACTCTGTCGTAGACGAATTGAGCTGGTAGTTAAGACTTTCCGCCATTGA | 1227 | 44.42 | MFCCSNQWSRVQASESEIGICYCLSRMLPWGGLSCCLSAAALYLLGRSSGRDAELLKSATRVNQLKELAQLLEAECLLPLVVAISGRVSSDTPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARNATNFILPVVSEVFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGELTRCMPKPSSFPSDRKSAKFFNDWCHFAWYFEEGQTISWEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLISNLGKWARWYKYASMGLGIFGLYLVTKHAILYLMERRRRWELQKRVLAAAAKRSSQENEGENEKASNGTDGTKRDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSHLTNCPLCRRRIELVVKTFRH | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5937397 | 5947018 | - | CmPI595203_09g006390.1 | Cmu09g0639 | 423868 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu09g0639 | 408 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 328 | 407 | IPR013083 | - | |
Cmu09g0639 | 408 | SUPERFAMILY | RING/U-box | 360 | 402 | - | - | |
Cmu09g0639 | 408 | MobiDBLite | consensus disorder prediction | 335 | 352 | - | - | |
Cmu09g0639 | 408 | MobiDBLite | consensus disorder prediction | 332 | 352 | - | - | |
Cmu09g0639 | 408 | ProSiteProfiles | Zinc finger RING-type profile. | 361 | 396 | IPR001841 | - | |
Cmu09g0639 | 408 | Pfam | E3 Ubiquitin ligase | 111 | 212 | IPR022170 | GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro) | |
Cmu09g0639 | 408 | Pfam | E3 Ubiquitin ligase | 249 | 301 | IPR022170 | GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro) | |
Cmu09g0639 | 408 | Pfam | Zinc finger, C3HC4 type (RING finger) | 359 | 400 | - | - | |
Cmu09g0639 | 408 | PANTHER | - | 27 | 212 | IPR044231 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu06g0694 | Cmu-Chr6:8071261 | Cmu09g0639 | Cmu-Chr9:5937397 | 4.00E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu09g0639 | K15688 | - | csv:101218196 | 629.402 |