Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0639 ATGTTTTGCTGCAGCAATCAATGGAGTCGAGTACAGGCTTCGGAATCTGAAATTGGAATCTGCTATTGCTTGTCGAGGATGCTTCCGTGGGGAGGTCTTAGTTGCTGTTTGAGTGCAGCTGCTCTTTATCTTCTTGGAAGGAGTAGTGGCCGGGATGCGGAGTTACTGAAATCTGCCACGCGGGTCAATCAGTTGAAGGAATTGGCTCAATTGCTTGAGGCAGAATGTCTATTACCTCTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTGATACACCAATAAATTGCGAATTTAGTGGGTTAAGGGGTGTAATTGTGGAGGAAACGGCAGAACAACACTTTTTAAAGCACAATGATGCAGGATCATGGATTCAGGATTCTGCATTGATGCTCTCCATGAGTAAAGAAGTTCCTTGGTATCTGGATGATGGGACTGGTCGTGCATTTGTGGTAGGAGCTCGAAATGCCACAAATTTTATATTACCAGTAGTGAGTGAGGTTTTTGAAGAGTCTGGCAGATCCCTTATGCGTGGCACTTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATAGAACGCGTTCTACCTACTGGTACTTCCTTGACTGTTGTTGGTGAGCTGACAAGATGTATGCCGAAGCCATCTTCCTTCCCTTCTGATAGAAAGTCTGCAAAGTTTTTCAATGACTGGTGCCACTTTGCTTGGTATTTTGAGGAGGGTCAAACAATAAGTTGGGAGGCTGCCAAAGATGACATTGGTACCATCAGAATTCAACGTCCACACAAAGGACCATTTTATGTCTCCCCAAAAACTATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCCATGGGTTTGGGTATATTTGGTTTGTATCTGGTCACAAAGCATGCTATTCTTTATCTCATGGAGAGAAGGCGTCGCTGGGAATTGCAGAAAAGGGTCCTTGCTGCAGCTGCCAAAAGATCAAGCCAAGAAAATGAAGGGGAAAATGAAAAGGCCAGCAATGGAACAGATGGTACAAAGAGAGACCGGTCAATGCCAGATCTTTGTGTAATATGTCTCGAGAGAGACTACAATGCTGTTTTTGTCCCGTGCGGCCATATGTGCTGCTGTGTAGCATGTTGTTCACATTTAACAAACTGTCCACTCTGTCGTAGACGAATTGAGCTGGTAGTTAAGACTTTCCGCCATTGA 1227 44.42 MFCCSNQWSRVQASESEIGICYCLSRMLPWGGLSCCLSAAALYLLGRSSGRDAELLKSATRVNQLKELAQLLEAECLLPLVVAISGRVSSDTPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARNATNFILPVVSEVFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGELTRCMPKPSSFPSDRKSAKFFNDWCHFAWYFEEGQTISWEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLISNLGKWARWYKYASMGLGIFGLYLVTKHAILYLMERRRRWELQKRVLAAAAKRSSQENEGENEKASNGTDGTKRDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSHLTNCPLCRRRIELVVKTFRH 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5937397 5947018 - CmPI595203_09g006390.1 Cmu09g0639 423868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0639 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 407 IPR013083 -
Cmu09g0639 408 SUPERFAMILY RING/U-box 360 402 - -
Cmu09g0639 408 MobiDBLite consensus disorder prediction 335 352 - -
Cmu09g0639 408 MobiDBLite consensus disorder prediction 332 352 - -
Cmu09g0639 408 ProSiteProfiles Zinc finger RING-type profile. 361 396 IPR001841 -
Cmu09g0639 408 Pfam E3 Ubiquitin ligase 111 212 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
Cmu09g0639 408 Pfam E3 Ubiquitin ligase 249 301 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
Cmu09g0639 408 Pfam Zinc finger, C3HC4 type (RING finger) 359 400 - -
Cmu09g0639 408 PANTHER - 27 212 IPR044231 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0694 Cmu-Chr6:8071261 Cmu09g0639 Cmu-Chr9:5937397 4.00E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0639 K15688 - csv:101218196 629.402