Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0705 ATGTTTGCTTCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTACCACAAGAGTCCACCCTGAATTCACCTGCTTAAACCCTCTCCTTCCATCTTTTTCTGATGTTCACCACCCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCGGATGCGGAAGTGATAGCGCTTTCGCCGAAAACACTACTAGCAACAAATAGATTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAATTTGCAGTTGCATAGGAGAGGGCACAATTTACCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGCTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGGGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGCCATGGCTGCCGCTGCTGCCGCTGCCTCCGGTGCCACTGATATCAACATAAACTCATCTTCAACCACCGCCGCCGACCAGTCGCTCTTTCCTTATGGTAATCACCATCAATTCTCGAACTCGACACTATCACTACCACCACCTCCACCTCTGTCTCAAACCCACATGTCTTTAAACCCTTGGGATCATCCCCAAAACCCTAACCCTAATCACACCCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATTCTTCCCATTCTCATAATTTTCACCAAATTCCAAATTTGCCCCTCTCCAATTCCTCCTCTGCCAACAACCCTTTTGGTCTAATTCAAGACCACCACCACCAAAAGGTAGGCTCATCCTCCTCCTCTTCCATGATAACCTCACCCTTCAGGAACCTCCACGTGTCAGTGCACCCGGGATCAAATGTTGCCACGTCAGCTCACCTATCAGCAACAGCCCTACTCCAAAAGGCAGCGACAGTTGGCGTTGGCGCTGCAAAATCCGGTCACCATCAACCCGAGTCAGTAGGCCACATGACTCACTTCAACATGCAAAACATCCCCGAGTTCGGTCCACCGAATCACATTGAATCACTGAGTCAACTTGATCCTGACTATGCCACGTGGCAGAAGACTGACCGGCTGACCAGGGACTTTCTCGGTCTGACTGGAGATGGGAACAGTGGCGTTGGTAGTGGTGGTGGTTCTGGCGGCAGTGGAGTGGTGCAAGTTAGCATGAGCGTTAAGGATATGCTAACGTACGGAAGTGGATTGGAGATGTTTAAGCCTCATAACAATAATAATAGTAGTAATAATAATTTTGGATATGCGGAGCCAGCTGCCAATGAAACTTGGGGAGATTGTTGA 1527 46.1 MFASTMSNSTSLSEEASVSSTTRVHPEFTCLNPLLPSFSDVHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAAAASGATDININSSSTTAADQSLFPYGNHHQFSNSTLSLPPPPPLSQTHMSLNPWDHPQNPNPNHTLQIIKPEDSNSHSSHSHNFHQIPNLPLSNSSSANNPFGLIQDHHHQKVGSSSSSSMITSPFRNLHVSVHPGSNVATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMQNIPEFGPPNHIESLSQLDPDYATWQKTDRLTRDFLGLTGDGNSGVGSGGGSGGSGVVQVSMSVKDMLTYGSGLEMFKPHNNNNSSNNNFGYAEPAANETWGDC 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6571100 6574362 + CmPI595203_09g007050.1 Cmu09g0705 423934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0705 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Cmu09g0705 508 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 153 177 - -
Cmu09g0705 508 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Cmu09g0705 508 FunFam protein indeterminate-domain 12-like 57 125 - -
Cmu09g0705 508 Gene3D Classic Zinc Finger 57 126 - -
Cmu09g0705 508 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 115 149 - -
Cmu09g0705 508 MobiDBLite consensus disorder prediction 256 328 - -
Cmu09g0705 508 Gene3D Classic Zinc Finger 147 212 - -
Cmu09g0705 508 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Cmu09g0705 508 MobiDBLite consensus disorder prediction 41 62 - -
Cmu09g0705 508 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Cmu09g0705 508 SMART c2h2final6 154 174 IPR013087 -
Cmu09g0705 508 SMART c2h2final6 78 100 IPR013087 -
Cmu09g0705 508 SMART c2h2final6 119 149 IPR013087 -
Cmu09g0705 508 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 448 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu09g0705 508 MobiDBLite consensus disorder prediction 272 328 - -
Cmu09g0705 508 MobiDBLite consensus disorder prediction 486 508 - -
Cmu09g0705 508 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 180 218 - -
Cmu09g0705 508 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1033 Cmu-Chr2:18154500 Cmu09g0705 Cmu-Chr9:6571100 6.30E-88 dispersed
Cmu05g1833 Cmu-Chr5:28402948 Cmu09g0705 Cmu-Chr9:6571100 1.10E-84 dispersed
Cmu07g1354 Cmu-Chr7:28841961 Cmu09g0705 Cmu-Chr9:6571100 4.40E-30 dispersed
Cmu09g0587 Cmu-Chr9:5392499 Cmu09g0705 Cmu-Chr9:6571100 2.50E-80 dispersed
Cmu09g0705 Cmu-Chr9:6571100 Cmu10g2759 Cmu-Chr10:34202717 6.50E-84 dispersed
Cmu09g0705 Cmu-Chr9:6571100 Cmu01g1872 Cmu-Chr1:32295810 3.30E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6807 PF00096 zf-C2H2 0.0051 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0705 K25870 - csv:101208253 785.408