Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu09g0705 | ATGTTTGCTTCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTACCACAAGAGTCCACCCTGAATTCACCTGCTTAAACCCTCTCCTTCCATCTTTTTCTGATGTTCACCACCCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCGGATGCGGAAGTGATAGCGCTTTCGCCGAAAACACTACTAGCAACAAATAGATTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAATTTGCAGTTGCATAGGAGAGGGCACAATTTACCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGCTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGGGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGCCATGGCTGCCGCTGCTGCCGCTGCCTCCGGTGCCACTGATATCAACATAAACTCATCTTCAACCACCGCCGCCGACCAGTCGCTCTTTCCTTATGGTAATCACCATCAATTCTCGAACTCGACACTATCACTACCACCACCTCCACCTCTGTCTCAAACCCACATGTCTTTAAACCCTTGGGATCATCCCCAAAACCCTAACCCTAATCACACCCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATTCTTCCCATTCTCATAATTTTCACCAAATTCCAAATTTGCCCCTCTCCAATTCCTCCTCTGCCAACAACCCTTTTGGTCTAATTCAAGACCACCACCACCAAAAGGTAGGCTCATCCTCCTCCTCTTCCATGATAACCTCACCCTTCAGGAACCTCCACGTGTCAGTGCACCCGGGATCAAATGTTGCCACGTCAGCTCACCTATCAGCAACAGCCCTACTCCAAAAGGCAGCGACAGTTGGCGTTGGCGCTGCAAAATCCGGTCACCATCAACCCGAGTCAGTAGGCCACATGACTCACTTCAACATGCAAAACATCCCCGAGTTCGGTCCACCGAATCACATTGAATCACTGAGTCAACTTGATCCTGACTATGCCACGTGGCAGAAGACTGACCGGCTGACCAGGGACTTTCTCGGTCTGACTGGAGATGGGAACAGTGGCGTTGGTAGTGGTGGTGGTTCTGGCGGCAGTGGAGTGGTGCAAGTTAGCATGAGCGTTAAGGATATGCTAACGTACGGAAGTGGATTGGAGATGTTTAAGCCTCATAACAATAATAATAGTAGTAATAATAATTTTGGATATGCGGAGCCAGCTGCCAATGAAACTTGGGGAGATTGTTGA | 1527 | 46.1 | MFASTMSNSTSLSEEASVSSTTRVHPEFTCLNPLLPSFSDVHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAAAASGATDININSSSTTAADQSLFPYGNHHQFSNSTLSLPPPPPLSQTHMSLNPWDHPQNPNPNHTLQIIKPEDSNSHSSHSHNFHQIPNLPLSNSSSANNPFGLIQDHHHQKVGSSSSSSMITSPFRNLHVSVHPGSNVATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMQNIPEFGPPNHIESLSQLDPDYATWQKTDRLTRDFLGLTGDGNSGVGSGGGSGGSGVVQVSMSVKDMLTYGSGLEMFKPHNNNNSSNNNFGYAEPAANETWGDC | 508 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6571100 | 6574362 | + | CmPI595203_09g007050.1 | Cmu09g0705 | 423934 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu09g0705 | 508 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 78 | 100 | IPR013087 | - | |
Cmu09g0705 | 508 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 153 | 177 | - | - | |
Cmu09g0705 | 508 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 80 | 100 | IPR013087 | - | |
Cmu09g0705 | 508 | FunFam | protein indeterminate-domain 12-like | 57 | 125 | - | - | |
Cmu09g0705 | 508 | Gene3D | Classic Zinc Finger | 57 | 126 | - | - | |
Cmu09g0705 | 508 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 115 | 149 | - | - | |
Cmu09g0705 | 508 | MobiDBLite | consensus disorder prediction | 256 | 328 | - | - | |
Cmu09g0705 | 508 | Gene3D | Classic Zinc Finger | 147 | 212 | - | - | |
Cmu09g0705 | 508 | Pfam | Zinc finger, C2H2 type | 78 | 100 | IPR013087 | - | |
Cmu09g0705 | 508 | MobiDBLite | consensus disorder prediction | 41 | 62 | - | - | |
Cmu09g0705 | 508 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 132 | 211 | - | - | |
Cmu09g0705 | 508 | SMART | c2h2final6 | 154 | 174 | IPR013087 | - | |
Cmu09g0705 | 508 | SMART | c2h2final6 | 78 | 100 | IPR013087 | - | |
Cmu09g0705 | 508 | SMART | c2h2final6 | 119 | 149 | IPR013087 | - | |
Cmu09g0705 | 508 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 43 | 448 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cmu09g0705 | 508 | MobiDBLite | consensus disorder prediction | 272 | 328 | - | - | |
Cmu09g0705 | 508 | MobiDBLite | consensus disorder prediction | 486 | 508 | - | - | |
Cmu09g0705 | 508 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 180 | 218 | - | - | |
Cmu09g0705 | 508 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 174 | IPR036236 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g1033 | Cmu-Chr2:18154500 | Cmu09g0705 | Cmu-Chr9:6571100 | 6.30E-88 | dispersed | |
Cmu05g1833 | Cmu-Chr5:28402948 | Cmu09g0705 | Cmu-Chr9:6571100 | 1.10E-84 | dispersed | |
Cmu07g1354 | Cmu-Chr7:28841961 | Cmu09g0705 | Cmu-Chr9:6571100 | 4.40E-30 | dispersed | |
Cmu09g0587 | Cmu-Chr9:5392499 | Cmu09g0705 | Cmu-Chr9:6571100 | 2.50E-80 | dispersed | |
Cmu09g0705 | Cmu-Chr9:6571100 | Cmu10g2759 | Cmu-Chr10:34202717 | 6.50E-84 | dispersed | |
Cmu09g0705 | Cmu-Chr9:6571100 | Cmu01g1872 | Cmu-Chr1:32295810 | 3.30E-88 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6807 | PF00096 | zf-C2H2 | 0.0051 | CL0361 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu09g0705 | K25870 | - | csv:101208253 | 785.408 |