Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0715 ATGGCGAACAATCATTCCGATACTCCGGCTGATGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTTGGTTCATCGGACCAAGGGTTAGCTGGAACTGACGGCGGATTGGCCGGAGCTGCTGCTGCTGCGGCAGCGGCGGCGGCTCAGGGTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGCGACGGTGGTGGTCATATCGCTACGATTGGGAGTGGTAGTGTCGGTGGAGCTGGGTTTCATGGCGGACCCCCTTTTCCTCTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCCTCTGGAAGTGGAAAGCGGTATTGTGGTGATGTTGTTGATGTTCGAGCTTCGTCTGTAAAAAATGTTTTTCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCCCCACATCCACCAGCAATGCGCCCTAGGGTACGTGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGACGGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTCCTACGTCTCCAAGTGAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGGAACCAACCGGCATGGGAGAAGTGGTCGAACGATGGTACAGAGAGACAAGTTGCTAAACTCATGGAAGAAAATGTGGGAGCCGCAATGCAATTCCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCGTTGGCTTCAGCGATTTATCACACGCAACCACCTGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAACCCTCCTCCATAG 942 51.8 MANNHSDTPADDFLEQILGISPFGSSDQGLAGTDGGLAGAAAAAAAAAAQGQAPMMLQLSSGDGGGHIATIGSGSVGGAGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGDVVDVRASSVKNVFQGQQMHATMGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6719025 6721986 + CmPI595203_09g007150.1 Cmu09g0715 423944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0715 313 Gene3D - 152 214 IPR036638 GO:0046983(InterPro)
Cmu09g0715 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 216 IPR036638 GO:0046983(InterPro)
Cmu09g0715 313 Pfam Helix-loop-helix DNA-binding domain 162 207 IPR011598 GO:0046983(InterPro)
Cmu09g0715 313 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 98 292 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cmu09g0715 313 FunFam Basic helix-loop-helix transcription factor 152 214 - -
Cmu09g0715 313 MobiDBLite consensus disorder prediction 237 256 - -
Cmu09g0715 313 MobiDBLite consensus disorder prediction 138 161 - -
Cmu09g0715 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983(InterPro)
Cmu09g0715 313 SMART finulus 163 212 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1699 Cmu-Chr2:30872259 Cmu09g0715 Cmu-Chr9:6719025 6.10E-43 dispersed
Cmu06g1282 Cmu-Chr6:23956548 Cmu09g0715 Cmu-Chr9:6719025 1.50E-46 dispersed
Cmu07g0083 Cmu-Chr7:707324 Cmu09g0715 Cmu-Chr9:6719025 3.50E-17 dispersed
Cmu09g0715 Cmu-Chr9:6719025 Cmu09g0819 Cmu-Chr9:7926626 3.00E-15 dispersed
Cmu09g0715 Cmu-Chr9:6719025 Cmu03g2230 Cmu-Chr3:30934821 2.10E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6809 PF00010 HLH 1.20E-07 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0715 - - - 0.0