Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0726 ATGATGGAAGAGGTCGAAGAAGCTAATAGGGAAGCTGTTGAGAGTTGTCATAAAGTGTTGAATCTCTTGACTGTGGCTTCCTCGTCTCAAGATCAGTTGAAGCTTAGGAGTCGTTTAATGGCGGAAACTGGAGACGCTGTGTTTAAGTTTAGGAAAGTTTTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGGTCAAGAACTTTTTGTTTAATTCCTCTTCTTCCCCTTTTCCTCTTCCCCAATCTTTGTTCTTAGAAACTTCTTCCCCTAATTGCAGAATGGACCTTCTCCAGGGCAGGAATTTGCAGATGGGTCCTCTTTGTTTGGGGAACCCATCTTTGGAATTGAACTCTAATGCCAAAAGTTGTTCAACCCAACAAATACAATCTCAATCTGCTGCTCTTTATCATCATCATCATCATCATCACTTGCTTCAGAACAGGGTGTTGTTGAACAATAATCCTAATCCTAATCCTCCACAGCCTGAAATGATGTATCTTAGGAGCAATAATGGCATTAACTTAAATTTTGATAGCTCTAGTTGCACACAACACACAATGTCATCCACTAGGTCGTTTATATCTTCCTTGAGCATTGATGGGAGTGTGGCTAGCTTGGATGGGAGTGCCTTTCATTTGATCGGGGCACCCCGGTCTTCCGATCAGAATTCGCATTCTAAGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAGTGGGAGATGTCACTGCTCAAAAAAGAGGAAACATAGAGTAAAGCGATCAATTAAGGTGCCCGCGATAAGTAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCACCTCACCCAAGAGGATACTATAAGTGCAGCAGCATGAGAGGCTGTCCAGCGAGGAAGCACGTCGAGCGGTGTCTCGAGGAACCTTCCATGCTCATTGTTACATATGAAGGTGAACACAACCATCCTAGAATACCTTCTCAACCTGCAAATACTTGA 1050 43.62 MMEEVEEANREAVESCHKVLNLLTVASSSQDQLKLRSRLMAETGDAVFKFRKVLCLLDSSGLGHARVRKKKVKNFLFNSSSSPFPLPQSLFLETSSPNCRMDLLQGRNLQMGPLCLGNPSLELNSNAKSCSTQQIQSQSAALYHHHHHHHLLQNRVLLNNNPNPNPPQPEMMYLRSNNGINLNFDSSSCTQHTMSSTRSFISSLSIDGSVASLDGSAFHLIGAPRSSDQNSHSKRKCSGRGEDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPSQPANT 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6856596 6858302 - CmPI595203_09g007260.1 Cmu09g0726 423955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0726 349 Gene3D WRKY domain 266 343 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0726 349 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 345 IPR044810 GO:0003700(InterPro)
Cmu09g0726 349 ProSiteProfiles WRKY domain profile. 276 342 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0726 349 Pfam WRKY DNA -binding domain 283 340 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0726 349 SUPERFAMILY WRKY DNA-binding domain 279 341 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0726 349 Pfam Plant zinc cluster domain 234 279 IPR018872 -
Cmu09g0726 349 MobiDBLite consensus disorder prediction 222 251 - -
Cmu09g0726 349 SMART WRKY_cls 281 341 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g0726 349 FunFam WRKY transcription factor 65 265 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2081 Cmu-Chr5:30426329 Cmu09g0726 Cmu-Chr9:6856596 8.80E-49 dispersed
Cmu08g1310 Cmu-Chr8:25370132 Cmu09g0726 Cmu-Chr9:6856596 2.40E-17 dispersed
Cmu09g0726 Cmu-Chr9:6856596 Cmu10g1920 Cmu-Chr10:24634645 2.20E-22 dispersed
Cmu07g0127 Cmu-Chr7:1121964 Cmu09g0726 Cmu-Chr9:6856596 3.30E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6812 PF03106 WRKY 3.50E-26 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0726 - - - 0.0