Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0739 ATGTCAATTGTTAATGATTTGTTTGGTAATTACCAAGAAGATTTCTTGTGGAACAATAATCAGGATGAAAGTTTAATTTCCGGGGAAGAGAATTATTTCAATTACTTGAAAGAGGTGTTGTTTGATGATATTTTTGAGGAGGCGGCCGGAGGAACGACGTCGTCAGATTCGAGTTCGAGTTCGAGTTCGAGTTCTTGTTCGTCTCCAGTGATGCAAGTTAAGGAGGAGATTGAGGAAGGGAGTTTTGGTGACGACAACGTTGTGCAGGAAGATGAATCACGTAAGGAGGATAGGGTTTATCGAGGGGTGCGAAGGAGGCCGTGGGGGAAGTACGCAGCCGAGATTAGGGATTCGACCCGACAAGGGGTGAGGGTGTGGTTGGGGACGTTTGATAGCGCCGAAGCGGCTGCGTTGGCGTATGACCAAGCCGCATTTTGCATGAGAGGAGGGTTAGCCACGCTTAACTTTCCGGTCGAGGTTGTACGAGAGTCACTCCGAGAGATGAAGTACCGGTGGGAGGCTGGGTGCTCGCCGGTCTTGGCGCTTAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCTGAGGTGGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAGAAGCAAACTGTAGTTGTTTTTGAGGATTTGGGTGTAGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA 693 48.05 MSIVNDLFGNYQEDFLWNNNQDESLISGEENYFNYLKEVLFDDIFEEAAGGTTSSDSSSSSSSSSCSSPVMQVKEEIEEGSFGDDNVVQEDESRKEDRVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPVEVVRESLREMKYRWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKKQTVVVFEDLGVEYLEELLSLTS 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7028368 7029060 + CmPI595203_09g007390.1 Cmu09g0739 423968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0739 230 ProSiteProfiles AP2/ERF domain profile. 99 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0739 230 Pfam AP2 domain 99 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0739 230 SUPERFAMILY DNA-binding domain 99 159 IPR016177 GO:0003677(InterPro)
Cmu09g0739 230 Coils Coil 189 209 - -
Cmu09g0739 230 MobiDBLite consensus disorder prediction 51 70 - -
Cmu09g0739 230 Gene3D AP2/ERF domain 99 160 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0739 230 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0739 230 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0739 230 SMART rav1_2 99 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0739 230 CDD AP2 100 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu09g0739 230 PANTHER DNA-BINDING DOMAIN 55 200 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cmu09g0739 230 FunFam Ethylene-responsive transcription factor 2 98 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0155 Cmu-Chr7:1473892 Cmu09g0739 Cmu-Chr9:7028368 3.50E-42 dispersed
Cmu09g0739 Cmu-Chr9:7028368 Cmu10g1080 Cmu-Chr10:3014951 6.70E-20 dispersed
Cmu09g0738 Cmu-Chr9:7016129 Cmu09g0739 Cmu-Chr9:7028368 1.50E-20 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6815 PF00847 AP2 4.50E-15 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0739 K14516 - csv:101205053 308.145