Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0769 ATGGAACAATCGACAGTTCTGTGTTCTACTTTTGCTGTTGTGAACAATTGTTCCATTGTTTGCTTTCTCGGTTTCTCCGACAGATTCAGAAACCCTAGCTCCGGCTTTAAGTTCTTCAGCGTTTTCAAACTCAACTTCATCTCCAAACCACCTTATCTCCATCCAAATTCTCTACCCTCTTCCCATTTGAAGTTTCACAGCCTCTCCTTAATCAGGGCTTGTAGACAGAGACCATGGATACTATTTGACCAAAACAAGGAGGATTCTTTGGAGTTCGAATCTATGGAGCAGAACCTCCCTCCACAATCTGACCTTTCAAAAGGGGTAGCTCATGGATGTCCAGAATGCAGTGACTGTCTGAAGGTCACTGCAAGGTGGCGGCCAGACGATGCAAGATCAGATATTCTTGAAGAGGCTGCTGTTTTTTATCCAACAGAGGAGGAATTTGCAGATACACTTCATTATATAGAAAGAATACGTTCAAGAGCAGAGTCAAGTGGAATCTGTCGCATAGTTCCTCCTCCATCATGGTTGCCTCCATGTCTTTTGAAGGGAAAGGAAACTTGGGAAAATTCTCCTTTCCTAGCCCACTATCAGCGGATTGATGGGTTACAGAAGACTTATGCATGTGGTCAATTTTCTAACCATAGTGGAAACGTGAAGAATAAGAGGAGAAGGTTAGAGTATGCGTGTGTTAATGGTCATTTGATGGATCCTAATGAAAGTTGTGGTAGTGATGAGAAAGGCCCAAACTCAGATCTTGGTCGAGAGTTTACCCTAAAAGCTTTTAAAAGCTATGCCGATGACTTTAAATCCCAGTATTTCAGCAGTGGAAATAAGTGCACATATACAGAAACAAAGTCATCCATGCTTCAAGAGCAGTGGGAACCGTTGGTGGATCAAGTAGAGGGTGAATATAGACGCATTCTCGAGAATCCAACTGAACAAATTGAGGTGCTATGCGGTGATAGTTCGGGTAGCCTTTCACTTGGCAGCGGATTTCCATCATCATCCAGTCCTTTGACTGAGCCAGGTCATGCTGATCATATGGAATCTGGATGGAACTTAAATAATTTACCTAGACTACCTGGTTCACTTCTTTCTTTGGATAGCTTCAAGACATATTCTATTTTGTCACCTCGAGTATGCGTGGGAATGTGCTTTTCTACCGCTTGTTGGCGAGTTGAAGAACACCACTTACCTTTGTTATGTTACTTGCACTTGGGAGCTCCTAAAATATGGTATGGCATTCCAGGAAGATACATTGATAAATTTGACGTAGCCATGAAGAGCCTTCCGGAATTTTTTGTGGAACAGAAAAGGTCTCGTAGAGGAATGGTCAATCAACCATCAATTGCCACATTGAAGAGAGAAGGTGTACCAATTTACCGTTGCATTCAAAATGCAGGAGAGTTTGTTCTCGTCTTTCCAGGAGCATGTCATTCAGGATTTAACTGTGGGTTTAATGTTACTGAAGAAGCCAATTTTGCTCCCCTTGACTGGTTGCCTCACGGTTATAATGCTACAGAGCTGTACTCTATAGAGAGAAGGAAGACGTTAATATCCTTCGATAGGCTGTTGCTTGGAGCAGCCACTGAAGCTGTGAAGGCACAGTGGGAACTCTCACTATGCAGGAAGGAAACCAAAGATAATTTACGATGGAAAAATGCCTGTGGAAAGCATGGGATATTAGCCCAGACATTCAAGTCTCGCATCAAAAGTGAAAGTCTCAGGAGGGAGTATCTTGCGACAGCTTCACAGACACGTGAAGTAACCGAAAGTTTTGATGCTGTCAGGAAGCGCGAATGCAGCATTTGCCTTTATGACTTACACTTGTCTGCAGCTGGTTGTTCATGTTCTGCTGATAGGTACTCTTGTTTGAATCACGCTAAGCAACTCTGTTCTTGTGCTTGGGTCAACAAATTCTTTGTCGTGCGGTACCAAATGGCCAACTTAAATCTTCTTCTTGAAGCCTTGGAAGGAAAACTAAGTGCAGTCTACAAATGGGCCAAAGAGAATCTTGGACTTGCTGTGCATTCCTACAAGAATAGTTCACTGCAATCTCAGCCTGCTGATACACCCCAGTCTTCACAAGGGCATCAATCCGAGGATGCAGAATCTCCAAATACTTTTAATAACTCGATCAATAGAATTAAGGCAGAGATAAAGGCACGTCTTCTTCAAGCGAAAACCTTGAAGAATATGAAAGGAAATGACAGGGTAATAGAATCCGTGGATGCAGTTAAAGACAATGGTATTGTCACAAATTTGGATTCGAGAATTCCAGCAGAAAAAACCGCATCGAAGCTACAGCCAGTGAGTTCGAATGAGCTCAAAGGAAAAGAATGTACATCAATCCCAGCAGTAGTTTTAAATGAAAGAGGAGATGTTTTAATCTTTTCACTCAATTTGGAGTCTTTTGCAACTTTACCTGAGAACTCAGTCTCAAGCTTCTCTGAATCCGATGACGATTGGTCAGATTCTGGCTTTTAA 2493 42.4 MEQSTVLCSTFAVVNNCSIVCFLGFSDRFRNPSSGFKFFSVFKLNFISKPPYLHPNSLPSSHLKFHSLSLIRACRQRPWILFDQNKEDSLEFESMEQNLPPQSDLSKGVAHGCPECSDCLKVTARWRPDDARSDILEEAAVFYPTEEEFADTLHYIERIRSRAESSGICRIVPPPSWLPPCLLKGKETWENSPFLAHYQRIDGLQKTYACGQFSNHSGNVKNKRRRLEYACVNGHLMDPNESCGSDEKGPNSDLGREFTLKAFKSYADDFKSQYFSSGNKCTYTETKSSMLQEQWEPLVDQVEGEYRRILENPTEQIEVLCGDSSGSLSLGSGFPSSSSPLTEPGHADHMESGWNLNNLPRLPGSLLSLDSFKTYSILSPRVCVGMCFSTACWRVEEHHLPLLCYLHLGAPKIWYGIPGRYIDKFDVAMKSLPEFFVEQKRSRRGMVNQPSIATLKREGVPIYRCIQNAGEFVLVFPGACHSGFNCGFNVTEEANFAPLDWLPHGYNATELYSIERRKTLISFDRLLLGAATEAVKAQWELSLCRKETKDNLRWKNACGKHGILAQTFKSRIKSESLRREYLATASQTREVTESFDAVRKRECSICLYDLHLSAAGCSCSADRYSCLNHAKQLCSCAWVNKFFVVRYQMANLNLLLEALEGKLSAVYKWAKENLGLAVHSYKNSSLQSQPADTPQSSQGHQSEDAESPNTFNNSINRIKAEIKARLLQAKTLKNMKGNDRVIESVDAVKDNGIVTNLDSRIPAEKTASKLQPVSSNELKGKECTSIPAVVLNERGDVLIFSLNLESFATLPENSVSSFSESDDDWSDSGF 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7309445 7315095 - CmPI595203_09g007690.1 Cmu09g0769 423998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0769 830 Pfam jmjN domain 141 173 IPR003349 -
Cmu09g0769 830 ProSiteProfiles JmjN domain profile. 139 180 IPR003349 -
Cmu09g0769 830 Pfam C5HC2 zinc finger 603 653 IPR004198 -
Cmu09g0769 830 MobiDBLite consensus disorder prediction 685 711 - -
Cmu09g0769 830 Pfam JmjC domain, hydroxylase 382 496 IPR003347 -
Cmu09g0769 830 PANTHER LYSINE-SPECIFIC DEMETHYLASE 134 712 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cmu09g0769 830 SMART JmjN_1 138 179 IPR003349 -
Cmu09g0769 830 SMART cupin_9 348 513 IPR003347 -
Cmu09g0769 830 SUPERFAMILY Clavaminate synthase-like 348 540 - -
Cmu09g0769 830 Gene3D Cupin 124 497 - -
Cmu09g0769 830 ProSiteProfiles JmjC domain profile. 348 513 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0769 K11446 - - csv:101221486 1269.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0769 Cmu-Chr9:7309445 Cmu11g1088 Cmu-Chr11:20008591 2.80E-177 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu11g1088 . 32 1263 JUMONJI Transcription Factor Family AT1G08620 54.7 0.0e+00 1249.6
Cmu09g0769 . 72 678 JUMONJI Transcription Factor Family AT1G08620 50.3 3.5e-168 589.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006657 1 4 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6818 PF02373 JmjC 1.70E-29 CL0029 Cmu TR