Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0769 ATGGAACAATCGACAGTTCTGTGTTCTACTTTTGCTGTTGTGAACAATTGTTCCATTGTTTGCTTTCTCGGTTTCTCCGACAGATTCAGAAACCCTAGCTCCGGCTTTAAGTTCTTCAGCGTTTTCAAACTCAACTTCATCTCCAAACCACCTTATCTCCATCCAAATTCTCTACCCTCTTCCCATTTGAAGTTTCACAGCCTCTCCTTAATCAGGGCTTGTAGACAGAGACCATGGATACTATTTGACCAAAACAAGGAGGATTCTTTGGAGTTCGAATCTATGGAGCAGAACCTCCCTCCACAATCTGACCTTTCAAAAGGGGTAGCTCATGGATGTCCAGAATGCAGTGACTGTCTGAAGGTCACTGCAAGGTGGCGGCCAGACGATGCAAGATCAGATATTCTTGAAGAGGCTGCTGTTTTTTATCCAACAGAGGAGGAATTTGCAGATACACTTCATTATATAGAAAGAATACGTTCAAGAGCAGAGTCAAGTGGAATCTGTCGCATAGTTCCTCCTCCATCATGGTTGCCTCCATGTCTTTTGAAGGGAAAGGAAACTTGGGAAAATTCTCCTTTCCTAGCCCACTATCAGCGGATTGATGGGTTACAGAAGACTTATGCATGTGGTCAATTTTCTAACCATAGTGGAAACGTGAAGAATAAGAGGAGAAGGTTAGAGTATGCGTGTGTTAATGGTCATTTGATGGATCCTAATGAAAGTTGTGGTAGTGATGAGAAAGGCCCAAACTCAGATCTTGGTCGAGAGTTTACCCTAAAAGCTTTTAAAAGCTATGCCGATGACTTTAAATCCCAGTATTTCAGCAGTGGAAATAAGTGCACATATACAGAAACAAAGTCATCCATGCTTCAAGAGCAGTGGGAACCGTTGGTGGATCAAGTAGAGGGTGAATATAGACGCATTCTCGAGAATCCAACTGAACAAATTGAGGTGCTATGCGGTGATAGTTCGGGTAGCCTTTCACTTGGCAGCGGATTTCCATCATCATCCAGTCCTTTGACTGAGCCAGGTCATGCTGATCATATGGAATCTGGATGGAACTTAAATAATTTACCTAGACTACCTGGTTCACTTCTTTCTTTGGATAGCTTCAAGACATATTCTATTTTGTCACCTCGAGTATGCGTGGGAATGTGCTTTTCTACCGCTTGTTGGCGAGTTGAAGAACACCACTTACCTTTGTTATGTTACTTGCACTTGGGAGCTCCTAAAATATGGTATGGCATTCCAGGAAGATACATTGATAAATTTGACGTAGCCATGAAGAGCCTTCCGGAATTTTTTGTGGAACAGAAAAGGTCTCGTAGAGGAATGGTCAATCAACCATCAATTGCCACATTGAAGAGAGAAGGTGTACCAATTTACCGTTGCATTCAAAATGCAGGAGAGTTTGTTCTCGTCTTTCCAGGAGCATGTCATTCAGGATTTAACTGTGGGTTTAATGTTACTGAAGAAGCCAATTTTGCTCCCCTTGACTGGTTGCCTCACGGTTATAATGCTACAGAGCTGTACTCTATAGAGAGAAGGAAGACGTTAATATCCTTCGATAGGCTGTTGCTTGGAGCAGCCACTGAAGCTGTGAAGGCACAGTGGGAACTCTCACTATGCAGGAAGGAAACCAAAGATAATTTACGATGGAAAAATGCCTGTGGAAAGCATGGGATATTAGCCCAGACATTCAAGTCTCGCATCAAAAGTGAAAGTCTCAGGAGGGAGTATCTTGCGACAGCTTCACAGACACGTGAAGTAACCGAAAGTTTTGATGCTGTCAGGAAGCGCGAATGCAGCATTTGCCTTTATGACTTACACTTGTCTGCAGCTGGTTGTTCATGTTCTGCTGATAGGTACTCTTGTTTGAATCACGCTAAGCAACTCTGTTCTTGTGCTTGGGTCAACAAATTCTTTGTCGTGCGGTACCAAATGGCCAACTTAAATCTTCTTCTTGAAGCCTTGGAAGGAAAACTAAGTGCAGTCTACAAATGGGCCAAAGAGAATCTTGGACTTGCTGTGCATTCCTACAAGAATAGTTCACTGCAATCTCAGCCTGCTGATACACCCCAGTCTTCACAAGGGCATCAATCCGAGGATGCAGAATCTCCAAATACTTTTAATAACTCGATCAATAGAATTAAGGCAGAGATAAAGGCACGTCTTCTTCAAGCGAAAACCTTGAAGAATATGAAAGGAAATGACAGGGTAATAGAATCCGTGGATGCAGTTAAAGACAATGGTATTGTCACAAATTTGGATTCGAGAATTCCAGCAGAAAAAACCGCATCGAAGCTACAGCCAGTGAGTTCGAATGAGCTCAAAGGAAAAGAATGTACATCAATCCCAGCAGTAGTTTTAAATGAAAGAGGAGATGTTTTAATCTTTTCACTCAATTTGGAGTCTTTTGCAACTTTACCTGAGAACTCAGTCTCAAGCTTCTCTGAATCCGATGACGATTGGTCAGATTCTGGCTTTTAA 2493 42.4 MEQSTVLCSTFAVVNNCSIVCFLGFSDRFRNPSSGFKFFSVFKLNFISKPPYLHPNSLPSSHLKFHSLSLIRACRQRPWILFDQNKEDSLEFESMEQNLPPQSDLSKGVAHGCPECSDCLKVTARWRPDDARSDILEEAAVFYPTEEEFADTLHYIERIRSRAESSGICRIVPPPSWLPPCLLKGKETWENSPFLAHYQRIDGLQKTYACGQFSNHSGNVKNKRRRLEYACVNGHLMDPNESCGSDEKGPNSDLGREFTLKAFKSYADDFKSQYFSSGNKCTYTETKSSMLQEQWEPLVDQVEGEYRRILENPTEQIEVLCGDSSGSLSLGSGFPSSSSPLTEPGHADHMESGWNLNNLPRLPGSLLSLDSFKTYSILSPRVCVGMCFSTACWRVEEHHLPLLCYLHLGAPKIWYGIPGRYIDKFDVAMKSLPEFFVEQKRSRRGMVNQPSIATLKREGVPIYRCIQNAGEFVLVFPGACHSGFNCGFNVTEEANFAPLDWLPHGYNATELYSIERRKTLISFDRLLLGAATEAVKAQWELSLCRKETKDNLRWKNACGKHGILAQTFKSRIKSESLRREYLATASQTREVTESFDAVRKRECSICLYDLHLSAAGCSCSADRYSCLNHAKQLCSCAWVNKFFVVRYQMANLNLLLEALEGKLSAVYKWAKENLGLAVHSYKNSSLQSQPADTPQSSQGHQSEDAESPNTFNNSINRIKAEIKARLLQAKTLKNMKGNDRVIESVDAVKDNGIVTNLDSRIPAEKTASKLQPVSSNELKGKECTSIPAVVLNERGDVLIFSLNLESFATLPENSVSSFSESDDDWSDSGF 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7309445 7315095 - CmPI595203_09g007690.1 Cmu09g0769 423998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0769 830 Pfam jmjN domain 141 173 IPR003349 -
Cmu09g0769 830 ProSiteProfiles JmjN domain profile. 139 180 IPR003349 -
Cmu09g0769 830 Pfam C5HC2 zinc finger 603 653 IPR004198 -
Cmu09g0769 830 MobiDBLite consensus disorder prediction 685 711 - -
Cmu09g0769 830 Pfam JmjC domain, hydroxylase 382 496 IPR003347 -
Cmu09g0769 830 PANTHER LYSINE-SPECIFIC DEMETHYLASE 134 712 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cmu09g0769 830 SMART JmjN_1 138 179 IPR003349 -
Cmu09g0769 830 SMART cupin_9 348 513 IPR003347 -
Cmu09g0769 830 SUPERFAMILY Clavaminate synthase-like 348 540 - -
Cmu09g0769 830 Gene3D Cupin 124 497 - -
Cmu09g0769 830 ProSiteProfiles JmjC domain profile. 348 513 IPR003347 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0769 Cmu-Chr9:7309445 Cmu11g1088 Cmu-Chr11:20008591 2.80E-177 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6818 PF02373 JmjC 1.70E-29 CL0029 Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0769 K11446 - csv:101221486 1269.22