Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0875 ATGAGTTGCTTTCCATGTTTTTCATCTCATGGGAAAGCAGCAAGAAGAACAAAGAGTGGTAGAAAGGAACAGTCTGTTTCGTCGCATTCTCGTAGTCATAAACAACAACAACAACCGCCGCCGCCGCAACAACAACATCATCCGGCTCCTCCTCCTCCACGTCCTACGCCTACAGACATTCCAAAGGGAAATCAGGTTCAAAAGGAAGCAGAGAAAGAGAAAGAGAAAGAGAATGAGATTATTGGGGAAAAGAATAACATTGCAGCACAAACCTTCACCTTCAGAGAATTGGCCACTGCTACAAAGAATTTCCGTCAAGAATGTCTCATTGGTGAAGGAGGGTTTGGGAGAGTTTACAAAGGAAAACTCGATAAAACTAATCAGGTTGTAGCAGTGAAGCAGCTTGACAGAAATGGATTGCAAGGGAACAGAGAGTTTCTTGTGGAAGTTTTGATGCTAAGCCTTTTACACCATCAAAACCTTGTCAATCTCATTGGCTATTGTGCAGATGGTGATCAAAGACTGTTGGTCTATGAGTACATGCCTTTAGGATCTCTGGAAGATCATCTACTTGATCTTCCATATGGAAGGAAGGCATTGGATTGGGGAACAAGGATGAAAGTAGGGTTGGGAGCAGCAAAAGGGCTAGAATACTTGCATAACAAAGCCAACCCACCAGTGATATATAGAGACTTGAAATCATCAAACATACTATTGGACGGTGATTACAATGCAAAGCTGTCAGATTTTGGACTTGCAAAGCTTGGTCCTGTTGGAGACAAGTCCCATGTTTCCTCCAGAGTTATGGGAACCTATGGATATTGTGCTCCTGAGTATCAAAGAACTGGTCAACTTACTCTCAAATCTGATGTCTATAGCTTTGGCGTCGTTTTGTTGGAACTCATCACTGGCAAGAGAGTCATCGACAACACTCGTCCAGCTAAACAACAAAATTTGGTCACTTGGGCATGCCCAATATTCAAGGAACCAGCTAGATTCAAGGAGTTGGCAGATCCTCTTCTTGGTGGAGACTTTCCTATAAGGGCTCTGAACCAAGCGATCGCGGTCGCCGCCATGTGCCTCCATGAGGAAGCGACGACCCGACCGTTGATGTGCGACGTTGTCACTGCTCTCAGCTTCTTAGGAGCAGAAGCCACACAGTCGTCGAGGTCTTCGTCGTTAGGTGATGTCCCATCACCCGTTGATGATTCCAATTTGATGAATCTATCCAAACCCATCGACTATCTTCACAATGACGAAACAGCTGAGGCACGCCAACGAGCGGTCGCCGAGGCCATGGAATGGGGTTCGTCCTCCAAGCAAAATGCTGCAGCTTCGCGCCCGGGAAGTTCTTCTTCCTTGTAA 1365 45.86 MSCFPCFSSHGKAARRTKSGRKEQSVSSHSRSHKQQQQPPPPQQQHHPAPPPPRPTPTDIPKGNQVQKEAEKEKEKENEIIGEKNNIAAQTFTFRELATATKNFRQECLIGEGGFGRVYKGKLDKTNQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPYGRKALDWGTRMKVGLGAAKGLEYLHNKANPPVIYRDLKSSNILLDGDYNAKLSDFGLAKLGPVGDKSHVSSRVMGTYGYCAPEYQRTGQLTLKSDVYSFGVVLLELITGKRVIDNTRPAKQQNLVTWACPIFKEPARFKELADPLLGGDFPIRALNQAIAVAAMCLHEEATTRPLMCDVVTALSFLGAEATQSSRSSSLGDVPSPVDDSNLMNLSKPIDYLHNDETAEARQRAVAEAMEWGSSSKQNAAASRPGSSSSL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8538959 8542329 - CmPI595203_09g008750.1 Cmu09g0875 424104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0875 454 PANTHER OS07G0668900 PROTEIN 37 390 - -
Cmu09g0875 454 FunFam Serine/threonine-protein kinase PBS1 181 394 - -
Cmu09g0875 454 MobiDBLite consensus disorder prediction 420 454 - -
Cmu09g0875 454 Gene3D Transferase(Phosphotransferase) domain 1 181 396 - -
Cmu09g0875 454 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524(InterPro)
Cmu09g0875 454 MobiDBLite consensus disorder prediction 65 82 - -
Cmu09g0875 454 SMART serkin_6 104 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g0875 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g0875 454 MobiDBLite consensus disorder prediction 41 59 - -
Cmu09g0875 454 CDD STKc_IRAK 110 378 - -
Cmu09g0875 454 Pfam Protein kinase domain 106 375 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g0875 454 ProSiteProfiles Protein kinase domain profile. 104 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g0875 454 FunFam Serine/threonine-protein kinase PBS1 72 180 - -
Cmu09g0875 454 Gene3D Phosphorylase Kinase; domain 1 62 180 - -
Cmu09g0875 454 SUPERFAMILY Protein kinase-like (PK-like) 90 387 IPR011009 -
Cmu09g0875 454 MobiDBLite consensus disorder prediction 435 454 - -
Cmu09g0875 454 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1693 Cmu-Chr3:21301187 Cmu09g0875 Cmu-Chr9:8538959 2.50E-121 dispersed
Cmu09g0875 Cmu-Chr9:8538959 Cmu10g2786 Cmu-Chr10:34455541 1.40E-130 dispersed
Cmu09g0870 Cmu-Chr9:8473734 Cmu09g0875 Cmu-Chr9:8538959 8.60E-63 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75788 PF00069 Pkinase 4.30E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0875 - - - 0.0