Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu09g0875 | ATGAGTTGCTTTCCATGTTTTTCATCTCATGGGAAAGCAGCAAGAAGAACAAAGAGTGGTAGAAAGGAACAGTCTGTTTCGTCGCATTCTCGTAGTCATAAACAACAACAACAACCGCCGCCGCCGCAACAACAACATCATCCGGCTCCTCCTCCTCCACGTCCTACGCCTACAGACATTCCAAAGGGAAATCAGGTTCAAAAGGAAGCAGAGAAAGAGAAAGAGAAAGAGAATGAGATTATTGGGGAAAAGAATAACATTGCAGCACAAACCTTCACCTTCAGAGAATTGGCCACTGCTACAAAGAATTTCCGTCAAGAATGTCTCATTGGTGAAGGAGGGTTTGGGAGAGTTTACAAAGGAAAACTCGATAAAACTAATCAGGTTGTAGCAGTGAAGCAGCTTGACAGAAATGGATTGCAAGGGAACAGAGAGTTTCTTGTGGAAGTTTTGATGCTAAGCCTTTTACACCATCAAAACCTTGTCAATCTCATTGGCTATTGTGCAGATGGTGATCAAAGACTGTTGGTCTATGAGTACATGCCTTTAGGATCTCTGGAAGATCATCTACTTGATCTTCCATATGGAAGGAAGGCATTGGATTGGGGAACAAGGATGAAAGTAGGGTTGGGAGCAGCAAAAGGGCTAGAATACTTGCATAACAAAGCCAACCCACCAGTGATATATAGAGACTTGAAATCATCAAACATACTATTGGACGGTGATTACAATGCAAAGCTGTCAGATTTTGGACTTGCAAAGCTTGGTCCTGTTGGAGACAAGTCCCATGTTTCCTCCAGAGTTATGGGAACCTATGGATATTGTGCTCCTGAGTATCAAAGAACTGGTCAACTTACTCTCAAATCTGATGTCTATAGCTTTGGCGTCGTTTTGTTGGAACTCATCACTGGCAAGAGAGTCATCGACAACACTCGTCCAGCTAAACAACAAAATTTGGTCACTTGGGCATGCCCAATATTCAAGGAACCAGCTAGATTCAAGGAGTTGGCAGATCCTCTTCTTGGTGGAGACTTTCCTATAAGGGCTCTGAACCAAGCGATCGCGGTCGCCGCCATGTGCCTCCATGAGGAAGCGACGACCCGACCGTTGATGTGCGACGTTGTCACTGCTCTCAGCTTCTTAGGAGCAGAAGCCACACAGTCGTCGAGGTCTTCGTCGTTAGGTGATGTCCCATCACCCGTTGATGATTCCAATTTGATGAATCTATCCAAACCCATCGACTATCTTCACAATGACGAAACAGCTGAGGCACGCCAACGAGCGGTCGCCGAGGCCATGGAATGGGGTTCGTCCTCCAAGCAAAATGCTGCAGCTTCGCGCCCGGGAAGTTCTTCTTCCTTGTAA | 1365 | 45.86 | MSCFPCFSSHGKAARRTKSGRKEQSVSSHSRSHKQQQQPPPPQQQHHPAPPPPRPTPTDIPKGNQVQKEAEKEKEKENEIIGEKNNIAAQTFTFRELATATKNFRQECLIGEGGFGRVYKGKLDKTNQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPYGRKALDWGTRMKVGLGAAKGLEYLHNKANPPVIYRDLKSSNILLDGDYNAKLSDFGLAKLGPVGDKSHVSSRVMGTYGYCAPEYQRTGQLTLKSDVYSFGVVLLELITGKRVIDNTRPAKQQNLVTWACPIFKEPARFKELADPLLGGDFPIRALNQAIAVAAMCLHEEATTRPLMCDVVTALSFLGAEATQSSRSSSLGDVPSPVDDSNLMNLSKPIDYLHNDETAEARQRAVAEAMEWGSSSKQNAAASRPGSSSSL | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 8538959 | 8542329 | - | CmPI595203_09g008750.1 | Cmu09g0875 | 424104 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu09g0875 | 454 | PANTHER | OS07G0668900 PROTEIN | 37 | 390 | - | - | |
Cmu09g0875 | 454 | FunFam | Serine/threonine-protein kinase PBS1 | 181 | 394 | - | - | |
Cmu09g0875 | 454 | MobiDBLite | consensus disorder prediction | 420 | 454 | - | - | |
Cmu09g0875 | 454 | Gene3D | Transferase(Phosphotransferase) domain 1 | 181 | 396 | - | - | |
Cmu09g0875 | 454 | ProSitePatterns | Protein kinases ATP-binding region signature. | 110 | 133 | IPR017441 | GO:0005524(InterPro) | |
Cmu09g0875 | 454 | MobiDBLite | consensus disorder prediction | 65 | 82 | - | - | |
Cmu09g0875 | 454 | SMART | serkin_6 | 104 | 381 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu09g0875 | 454 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 227 | 239 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu09g0875 | 454 | MobiDBLite | consensus disorder prediction | 41 | 59 | - | - | |
Cmu09g0875 | 454 | CDD | STKc_IRAK | 110 | 378 | - | - | |
Cmu09g0875 | 454 | Pfam | Protein kinase domain | 106 | 375 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu09g0875 | 454 | ProSiteProfiles | Protein kinase domain profile. | 104 | 381 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu09g0875 | 454 | FunFam | Serine/threonine-protein kinase PBS1 | 72 | 180 | - | - | |
Cmu09g0875 | 454 | Gene3D | Phosphorylase Kinase; domain 1 | 62 | 180 | - | - | |
Cmu09g0875 | 454 | SUPERFAMILY | Protein kinase-like (PK-like) | 90 | 387 | IPR011009 | - | |
Cmu09g0875 | 454 | MobiDBLite | consensus disorder prediction | 435 | 454 | - | - | |
Cmu09g0875 | 454 | MobiDBLite | consensus disorder prediction | 1 | 82 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu03g1693 | Cmu-Chr3:21301187 | Cmu09g0875 | Cmu-Chr9:8538959 | 2.50E-121 | dispersed | |
Cmu09g0875 | Cmu-Chr9:8538959 | Cmu10g2786 | Cmu-Chr10:34455541 | 1.40E-130 | dispersed | |
Cmu09g0870 | Cmu-Chr9:8473734 | Cmu09g0875 | Cmu-Chr9:8538959 | 8.60E-63 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75788 | PF00069 | Pkinase | 4.30E-46 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu09g0875 | - | - | - | 0.0 |