Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0906 ATGACGCTTTACGAAGAGAATCCAGGGGAGTCTCGGAAAGGTTTGGAAGGTGAGGATCTGTATGAAGAACTGTGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTGTCAATGGAGAAAGAGTTTTTTACTTTCCTCAGGGTCATATGGAACAATTGGAAGAGTCCACGAATCAGGAGCTTAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTTTGTCGTGTTGTTAACATTCGTTTGCTGGCTGAAAAGGAAACAGATGAGGTCTATGCTCAAATCACTTTATACCCAGAAGCTGATCAAAGTGAGCCCCAAAGCCCTGATCCAGAGCCGCCTGAGCGTACAAGGCAAACTGTTCATTCCTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGTTTCTCAGTTCTTAGGAAGCATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGTTAGTTGCCAAGGATCTTCATGGGTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCGCGGAGGCATTTGCTAACTACCGGGTGGAGTACATTTGTTACATCGAAGCGGCTGGTTGCTGGGGATGCCTTTGTTTTCTTAAGGGGTGACAATGGGGAACTGAGGGTTGGAGTTCGACGGCAGGCTCGGCAGCAGAGTTTGATGCCTTCCTCCGTGATATCTAGCCATAGTATGCACCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGAACGCAGACCTATTTCGTTGTTTATTACAAACCGAGAACTAGCCAATTCATCATCAGCTTGAACAAATACTTGGAGACGATTAAAAACGGATATGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAGGAATCACCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGTGATATTTCTCCGCAATGGTTGAATTCTAAATGGCGATCGCTAAAGATTCAATGGGATGAACCTGCTACGATTCAGAGGCCAGAACGAGTTTCTCCATGGGAGATTGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCCATAAAAAGTAAAAGGGCTCGTCCTGTCGAGATTCCTTCACCTGAAATTACTTCCAGTTCAGCCCCTTCGGGCTTTTGGCTTCAAGGATCGACAATTCCTCATGAAATACCCCAACTAAGTGGTACGAATGAAGTTCAAAGCAGCAATAACCGGGTTGTCTGGGCTCTCGGACAGCGAAAACTCGACAGCAATAGCAACCACAGTAATCCAATAGCAAATGTTGAAGGCATCTGGCCTTCTCCTCCACTCAATATTTCCCTGAAGCTTTACCCAGATTCAACATTTGATAGCGAACTTGTTCAAAAGCAGGCACCACCCTCTCCTTATTCTTCATCTGTCACATCAAAGCCTAGTAGTGACCTCATACAGCACGATCAACTGGAGAAAGGGAATAAAACCGACATTTCTCTCGGTTGCCGAATATTTGGAATCGATTTGAAAAATAACTCAAGCATTGTCTCTTCCTTGGAAAGAAAATCGTGTTGCCCAATGACGGTGGCCAATGGTGCCAAAGATCCAGTAGCTGCAGCTGCTGTGACACCTCCAGTCGTTGTTGGAAACCTCTCACAGCCTTCAAAGGAGCAGCTGCAAGCGTCATCAGAGGTGTCGACAAAGGGAACACAGACAAAACACATTTCCAATCTCTCATTGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCGGTTGGTCGAGCGGTCGACTTGACTACACTTGAAGGGTATGAAGATCTGATAGACGAGCTGGAGAATGTATTTGAAATAAAAGGAGAACTTCGTGAAATGAACAAATGGTCTGTCGTTTTCACGGATGACGAAAACGACATGATGCTTGTGGGGGACGATCCATGGCCGGAGTTCTGTAAGATGGCGAAGAGGATCTTTATATATTCAAGTGAAGAAGTGAAGAAGATGAGTAGGGAAAGCAAGCTTGTTTCCCCATCTTCCTTGGATAGCTTGGATTCAGAGCGCAAGACTGAATCCTAA 2082 45.44 MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVNGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSPDPEPPERTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETIKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDISPQWLNSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAIKSKRARPVEIPSPEITSSSAPSGFWLQGSTIPHEIPQLSGTNEVQSSNNRVVWALGQRKLDSNSNHSNPIANVEGIWPSPPLNISLKLYPDSTFDSELVQKQAPPSPYSSSVTSKPSSDLIQHDQLEKGNKTDISLGCRIFGIDLKNNSSIVSSLERKSCCPMTVANGAKDPVAAAAVTPPVVVGNLSQPSKEQLQASSEVSTKGTQTKHISNLSLRTRTKVQMQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELREMNKWSVVFTDDENDMMLVGDDPWPEFCKMAKRIFIYSSEEVKKMSRESKLVSPSSLDSLDSERKTES 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8976003 8979450 + CmPI595203_09g009060.1 Cmu09g0906 424135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0906 693 SMART B3_2 125 227 IPR003340 GO:0003677(InterPro)
Cmu09g0906 693 Pfam Auxin response factor 251 330 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu09g0906 693 MobiDBLite consensus disorder prediction 670 693 - -
Cmu09g0906 693 SUPERFAMILY CAD & PB1 domains 579 659 - -
Cmu09g0906 693 ProSiteProfiles PB1 domain profile. 583 675 IPR053793 -
Cmu09g0906 693 Gene3D - 122 227 IPR015300 -
Cmu09g0906 693 CDD B3_DNA 123 225 IPR003340 GO:0003677(InterPro)
Cmu09g0906 693 Pfam AUX/IAA family 629 667 IPR033389 -
Cmu09g0906 693 Pfam AUX/IAA family 562 619 IPR033389 -
Cmu09g0906 693 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Cmu09g0906 693 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677(InterPro)
Cmu09g0906 693 MobiDBLite consensus disorder prediction 555 576 - -
Cmu09g0906 693 MobiDBLite consensus disorder prediction 99 121 - -
Cmu09g0906 693 Gene3D - 287 358 - -
Cmu09g0906 693 FunFam Auxin response factor 578 671 - -
Cmu09g0906 693 FunFam Auxin response factor 286 357 - -
Cmu09g0906 693 FunFam Auxin response factor 123 227 - -
Cmu09g0906 693 Gene3D - 579 671 - -
Cmu09g0906 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 673 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu09g0906 693 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1130 Cmu-Chr7:26415172 Cmu09g0906 Cmu-Chr9:8976003 2.30E-212 dispersed
Cmu09g0906 Cmu-Chr9:8976003 Cmu11g0026 Cmu-Chr11:729583 2.50E-179 dispersed
Cmu09g0906 Cmu-Chr9:8976003 Cmu02g2094 Cmu-Chr2:34577424 3.40E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6829 PF02309 AUX_IAA 6.80E-06 CL0072 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0906 K14486 - csv:101205805 1241.87