Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu09g0923 | TGCTTAGGAATTTGTTGTTGCATCTTAACGATTTTACTGGTTACACTTGTCTTGGCAGTTGTCAGTGCCAAGCTAGCTGCCCCTGCTCAAAAAGGTTTACCTTCTCAGTCTATAAAGTCACAAGATATTGAAAACAAAAAGAAGCAGGACGAGGTTGAGGTTGCCGCCAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAAAGCTTCAGTCCCAGATGCTACTCCTGTACCACAGGAAGAAAATCTTCGCTCGCCCATATGTTGTATTATGGGTCATGTTGATACTGGTAAAACCAAGCTGCTGGACTGTATCCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCCGAGAACATTCGGGAAAGAACTAGGGAATTGAAGGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCATGAGTCGTTTACAAACTTACGTTCTCGTGGTTCGGGCTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCCTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAATACAGAATTTATTGTTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATTCTTAAGACAATGAAGCAGCAAACCAAGGATGTGCAGAACGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAGGGATTGAATACTGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACATGTTACTATTATTGGTGCAGTGGGCCCAGAGAACTATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGCACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGTTGCATGAAGGAGATCAAATTGTTGTTTGTGGGATGCAGGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGGGTGAAGGGAACATATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATTAAAATAACTGGACAGGGTCTCGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATCAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATATATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAGGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTTTTTCCTTGTGTTCTCAAAATTCTACCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTTGATGTGATTGAGGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAACCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCTATTAAGATAGTTGGGCACTCTTCGGAGGAGCAACAAAAGATGTATGGTAGACACTTTGATTTGGAGGACGAACTTGTCAGCCATATATCGAGGAAGTCCATTGACCTTCTCAAAGCGAACTACCGGGATGATTTGTCCACGGATGAGTGGAGACTCGTGGTGAAATTGAAGAATCTCTTCAAGATACAGTGA | 2028 | 41.81 | CLGICCCILTILLVTLVLAVVSAKLAAPAQKGLPSQSIKSQDIENKKKQDEVEVAAKGKRKDDAVKKKASVPDATPVPQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQRTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ | 675 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 9180977 | 9191541 | + | CmPI595203_09g009230.1 | Cmu09g0923 | 424152 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu09g0923 | 675 | CDD | IF2_eIF5B | 86 | 296 | - | - | |
Cmu09g0923 | 675 | NCBIfam | small GTP-binding protein domain | 88 | 214 | IPR005225 | GO:0005525(InterPro) | |
Cmu09g0923 | 675 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 83 | 374 | IPR027417 | - | |
Cmu09g0923 | 675 | MobiDBLite | consensus disorder prediction | 36 | 78 | - | - | |
Cmu09g0923 | 675 | FunFam | eukaryotic translation initiation factor 5B | 306 | 425 | - | - | |
Cmu09g0923 | 675 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 408 | 537 | IPR036925 | - | |
Cmu09g0923 | 675 | Pfam | Translation-initiation factor 2 | 412 | 524 | IPR023115 | - | |
Cmu09g0923 | 675 | MobiDBLite | consensus disorder prediction | 41 | 69 | - | - | |
Cmu09g0923 | 675 | SUPERFAMILY | Translation proteins | 542 | 674 | IPR009000 | - | |
Cmu09g0923 | 675 | Pfam | Elongation factor Tu domain 4 | 545 | 618 | IPR029459 | - | |
Cmu09g0923 | 675 | FunFam | Eukaryotic translation initiation factor 5B | 425 | 531 | - | - | |
Cmu09g0923 | 675 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 83 | 299 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cmu09g0923 | 675 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 34 | 674 | IPR015760 | GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER) | |
Cmu09g0923 | 675 | FunFam | Eukaryotic translation initiation factor 5B | 538 | 675 | - | - | |
Cmu09g0923 | 675 | Pfam | Elongation factor Tu domain 2 | 322 | 397 | IPR004161 | GO:0005525(InterPro) | |
Cmu09g0923 | 675 | Gene3D | - | 78 | 305 | IPR027417 | - | |
Cmu09g0923 | 675 | Gene3D | Translation factors | 538 | 675 | - | - | |
Cmu09g0923 | 675 | PRINTS | GTP-binding elongation factor signature | 87 | 100 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cmu09g0923 | 675 | PRINTS | GTP-binding elongation factor signature | 151 | 161 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cmu09g0923 | 675 | PRINTS | GTP-binding elongation factor signature | 203 | 212 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cmu09g0923 | 675 | PRINTS | GTP-binding elongation factor signature | 167 | 178 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cmu09g0923 | 675 | CDD | aeIF5B_II | 307 | 417 | - | - | |
Cmu09g0923 | 675 | Pfam | Elongation factor Tu GTP binding domain | 86 | 295 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cmu09g0923 | 675 | Coils | Coil | 520 | 540 | - | - | |
Cmu09g0923 | 675 | Gene3D | Translation factors | 306 | 424 | - | - | |
Cmu09g0923 | 675 | FunFam | Eukaryotic translation initiation factor 5B | 77 | 305 | - | - | |
Cmu09g0923 | 675 | CDD | IF2_aeIF5B_IV | 546 | 641 | - | - | |
Cmu09g0923 | 675 | Gene3D | - | 425 | 531 | IPR036925 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu09g0923 | Cmu-Chr9:9180977 | Cmu11g1622 | Cmu-Chr11:28493685 | 5.00E-23 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu09g0923 | K03243 | - | csv:101204360 | 1239.56 |