Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g0994 ATGGATCCTGAAGATAGTTTGTGTAGCTCTGAAGTTTGGACAAAATCTTCTTTTCCTAATAATAATATTCAGCAACCAGCACAAAAATGGGCAGATGCTTCCATTTTAGACTATGCTATGGAACAACCTTTCCAAGAATTTGAAGAACGGACTGAATCGAAGGCCTCCCTAAGCTGTAACCCGAATCAACAAATTGAAATCCTTGATAAAGATAGTAATCAGATGAATGCAGCACTTCTAGCCAGTAAAATTCAAGATTGGGATCCGAGGGCAATGCTAAATAATCTTTCTTTTCTTGAGCAGAAGATTCATCAGCTTCAGGAACTTGTGCATTTGATCGTTGGTCGGAGGAGCCAAGTCTTCGGGAGGCCAGATGAACTTGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTAACTTCAATTATTGTTCAGTTAATCTCGACGGCTGGTAGTCTGCTTCCATCTGTAAAGCATAACTTGTCTGCTGCTGTTCCTGCAGTCGGGCAGCTGGAGCAGCTCGACAAAGTTCTTTTCGCGTCTGGACCCGGGACTGATAATGGTGGTGTTCAGTCACAACATGGTGATGGAACCAAACTCCCCGAGCTTCCAACCCAAGTGGACGGAAGTAGCAAGTGTGGGAAAGAACAGAACATGACTGTTGAAGAACACGAATCAAAGGATGAAGAAGACGCAGATGATAATGAGAACCTTCCACCCGGTTCGTATGAAATATTGCAGCTAGAAAAAGAAGAGATCCTAGCACCTCACACCCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGAGATGCAAATCTACGAATGCACATGAGGGGTCATGGTGACGAGTATAAAACTGCAGCTGCCCTTGCAAAGCCGAACAAAGAAATGGGTTCCGAGACCATGCTAATTAAGAGGTATTCCTGCCCCTTCACCGGCTGCAAGCGTAACAAGGATCATAAGAAGTTTCAGCCTTTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCTAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCATTGTGGGAAAGATAAATGGCTTTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGATGAGTCAAAGGGAGCAGTCATGTCCTGTGATCGAGGAGAACGCTATGAAACAATGAATAAGCTTGGGAGCATAAATTTCAGTTTCGGGTCGGTTGCTTCAGGAGGAAGCTCAGTTGAAACCATAGGAGATGCAAAAGGTGGTGTTGATGATCCTCTTAGTTATTTCTCACCTCTGAACTTCGATTCATGTAATTTTGGTGGCTTTCATGAGTTTCCTCGACCGCCATTCGAAAACACAGACAATGCATTTTCGTTCCTTATCCCGGCATCTAGCAATTACACCCAAAAATCTGGTGCAGAATCAAGCTCTTGA 1527 43.42 MDPEDSLCSSEVWTKSSFPNNNIQQPAQKWADASILDYAMEQPFQEFEERTESKASLSCNPNQQIEILDKDSNQMNAALLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRSQVFGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPAVGQLEQLDKVLFASGPGTDNGGVQSQHGDGTKLPELPTQVDGSSKCGKEQNMTVEEHESKDEEDADDNENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKEMGSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGAVMSCDRGERYETMNKLGSINFSFGSVASGGSSVETIGDAKGGVDDPLSYFSPLNFDSCNFGGFHEFPRPPFENTDNAFSFLIPASSNYTQKSGAESSS 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10037445 10038971 - CmPI595203_09g009940.1 Cmu09g0994 424223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g0994 508 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 64 491 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Cmu09g0994 508 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Cmu09g0994 508 SUPERFAMILY beta-beta-alpha zinc fingers 257 285 IPR036236 -
Cmu09g0994 508 Gene3D Classic Zinc Finger 243 314 - -
Cmu09g0994 508 SMART c2h2final6 308 341 IPR013087 -
Cmu09g0994 508 SMART c2h2final6 346 368 IPR013087 -
Cmu09g0994 508 SMART c2h2final6 259 281 IPR013087 -
Cmu09g0994 508 MobiDBLite consensus disorder prediction 182 241 - -
Cmu09g0994 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1335 Cmu-Chr1:26567780 Cmu09g0994 Cmu-Chr9:10037445 1.60E-60 dispersed
Cmu01g1814 Cmu-Chr1:31813195 Cmu09g0994 Cmu-Chr9:10037445 9.30E-64 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6835 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g0994 - - - 0.0