Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1023 ATGAGTTGGTTTCAATGTTGCATGTCAGAGGAGAGAGTTAATAGAAATGCTTTGAAAAAGAGCATTATGGAATACCATGACACAAAAACTTTAGCCTCATTTGCCAATCTTTCCTTCAAGTCTGGTAACAATAGAGGAAGGTACACAAATAAGGAGTTAAAGAGGTTACGAAAAGGGAACATTTTAGCTCAAACCTTTACATTCCGTGAGCTATGTGTTGCAACAAATAACTTCAACAACAAAAATCTATTGGGGGAAGGTGGTTTTGGAAGGGTTTACAAAGCCCTCATTGAAAGCACAAAACAAGTAACGGCCGTGAAGCGACTTGATCCAAATGGATTTCAAGGGAACAGAGAATTTCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCCAATCTAGTCAATTTGGTTGGGTATTGTGCTGATGCAAATCAAAGGATTTTGGTTTATGAGTATATGGCTAATGATACAGCTTCAAATAAGCCACCTCTAGATTGGAACACAAGGATGAAAATCGTCAAAGGAATCGCAAGAGGACTCGAATACTTACACGAAACCGTCAGTCTTCCCGTGATATACCGCGACTTTAAAGCTTCAAACATATTGTTGGATGAAGAATTCAATGCAAAGCTCTCTGATTTTGGTCTTGCAAAGATAGGTCCCATTGGAGATCAATCTCATGTTTCCACAAGAGTGATGGGAACTTATGGTTATTGTGCTCCTGAATATGCACTTACAGGACAATTGTCCACCAAATCCGATGTCTACGGTTTCGGCGTCGTCTTCTTGGAGATAATCACAGGAAGACGAGTTATTGACAACACAAAACCAACTGGACAAAAAAATTTAATTTCTTGGGCACAACCACTTTTCAAAGACAGAAGGAAATTCACACTAATGGCAGATCCAAAGCTAGAAGGAAATTACCCAGTGAAGGCTCTTTATCAAGCTCTAGCAGTGGTAGCCATGTGTTTGCAAGAGGAAGCAAATACTCGGCCATTGATTAGCGACGTGGTTACAGCGCTTCAATATTTAGCTGTGAGTGACAAGAATGTCGATGAAGACGTAGATGACGAATCAGATTCGGAGTCGGTATCTGAATCGGAATTAAGTTGTTCATATTCATGTTCAACTTCTCCTGATAGAAGAAGTGATATTGGAGGTAAAAATGTTGGTGTTGAAGGTGATGGGAGAGGAGAGTGGGCACGAATCACCACCCGTGGATTCTCATTCATTCTACCCAACTCCCATGTTCTTCAGATTCAATTCCCTTTCTTAATCGCCATGAAAAGACGGACTTTGCTCAAGGTCATCGTTCTCGGTGATAGTGGGGTTGGTAAGACGTCGTTGATGAACCAGTATCCTTCTGAAAATTGGTTGTTGACAATGATATTGATCTGTGTTTTGAGCATATACGTGCATAAGAAGTTCAGCCAGCAATATAAAGCTACAATTGGTGCAGATTTTGTCACCAAGGAACTTCAAATTGACGATAGGCTTGTCACACTTCAAATATGGGATACAGCCGGACAAGAAAGATTTCAAAGTCTTGGAGTTGCATTCTATAGAGGGGCAGATTGCTGTGTTCTAGTCTATGATGTTAACGTGATGAAGTCATTTGACACACTTGATACTTGGCACGATGAGTTTCTTAGACAGGTAAATCCGTTCAGTTCTTTGAGTTTTCTTGCTTTTTGTGATGTTGTGTTGGCTGTTGAGCTTGCTTATTATTACTCTGTTACTAGGATCTTTTACAGCTTGTCTGAGGGAAAATTATCAGCACATTTTTTCTACAGTAATGGTTTCAGAGGAAGGGAAGGGGCTTTTTGGGTTGTACCCTGCATCCTCATTTTTTCCTTCTCATTCAAAAAGTGTTGTTTTATTTGCGTTGCTCTGGCAAACCCACCTGACCCTAGGACGTTTCCGTTTATTTTGCTTGGAAATAAGATCGACATTGATGGTGGGAATAGTCGAGTGGTCTCTGAGAAGAAAGCTAGGGAATGGTGTGCTTCAAAAGAAAATATTCCCTACTTCGAGACATCAGCTAAAGAGGACTACAACGTCGATGCTGCTTTTTTATGCATTGCCAAGACTGCATTAGCCAATGAACATGAGCAGGATATATATTTCCAAGGAATCCCCGAAACCGTCGTGGAGACTGAGCAAAGAGGTGGCTGCGCATGCTGA 2193 40.86 MSWFQCCMSEERVNRNALKKSIMEYHDTKTLASFANLSFKSGNNRGRYTNKELKRLRKGNILAQTFTFRELCVATNNFNNKNLLGEGGFGRVYKALIESTKQVTAVKRLDPNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADANQRILVYEYMANDTASNKPPLDWNTRMKIVKGIARGLEYLHETVSLPVIYRDFKASNILLDEEFNAKLSDFGLAKIGPIGDQSHVSTRVMGTYGYCAPEYALTGQLSTKSDVYGFGVVFLEIITGRRVIDNTKPTGQKNLISWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVVAMCLQEEANTRPLISDVVTALQYLAVSDKNVDEDVDDESDSESVSESELSCSYSCSTSPDRRSDIGGKNVGVEGDGRGEWARITTRGFSFILPNSHVLQIQFPFLIAMKRRTLLKVIVLGDSGVGKTSLMNQYPSENWLLTMILICVLSIYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDTWHDEFLRQVNPFSSLSFLAFCDVVLAVELAYYYSVTRIFYSLSEGKLSAHFFYSNGFRGREGAFWVVPCILIFSFSFKKCCFICVALANPPDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKENIPYFETSAKEDYNVDAAFLCIAKTALANEHEQDIYFQGIPETVVETEQRGGCAC 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10316235 10329182 - CmPI595203_09g010230.1 Cmu09g1023 424252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1023 730 ProSiteProfiles small GTPase Rho family profile. 429 706 - -
Cmu09g1023 730 MobiDBLite consensus disorder prediction 355 392 - -
Cmu09g1023 730 SUPERFAMILY Protein kinase-like (PK-like) 63 342 IPR011009 -
Cmu09g1023 730 PRINTS Transforming protein P21 ras signature 496 518 - -
Cmu09g1023 730 PRINTS Transforming protein P21 ras signature 478 494 - -
Cmu09g1023 730 PRINTS Transforming protein P21 ras signature 437 458 - -
Cmu09g1023 730 SMART rab_sub_5 437 704 - -
Cmu09g1023 730 Pfam Protein kinase domain 79 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1023 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g1023 730 CDD Rab7 437 707 - -
Cmu09g1023 730 PANTHER OS07G0668900 PROTEIN 43 366 - -
Cmu09g1023 730 FunFam Serine/threonine-protein kinase PBS1 151 363 - -
Cmu09g1023 730 Pfam Ras family 639 701 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu09g1023 730 Pfam Ras family 469 557 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu09g1023 730 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524(InterPro)
Cmu09g1023 730 CDD STKc_IRAK 84 345 - -
Cmu09g1023 730 Gene3D Transferase(Phosphotransferase) domain 1 153 372 - -
Cmu09g1023 730 MobiDBLite consensus disorder prediction 368 386 - -
Cmu09g1023 730 ProSiteProfiles small GTPase Rab1 family profile. 432 730 - -
Cmu09g1023 730 Gene3D - 430 574 IPR027417 -
Cmu09g1023 730 ProSiteProfiles small GTPase Ras family profile. 431 730 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu09g1023 730 FunFam probable serine/threonine-protein kinase RLCKVII 50 154 - -
Cmu09g1023 730 Gene3D - 611 715 IPR027417 -
Cmu09g1023 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 707 IPR027417 -
Cmu09g1023 730 Gene3D Phosphorylase Kinase; domain 1 40 152 - -
Cmu09g1023 730 ProSiteProfiles Protein kinase domain profile. 78 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1023 730 SMART rho_sub_3 439 704 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu09g1023 730 SMART ras_sub_4 434 704 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0194 Cmu-Chr9:2059428 Cmu09g1023 Cmu-Chr9:10316235 3.80E-75 dispersed
Cmu09g1023 Cmu-Chr9:10316235 Cmu10g1360 Cmu-Chr10:6560225 5.50E-169 dispersed
Cmu11g1767 Cmu-Chr11:29804425 Cmu09g1023 Cmu-Chr9:10316235 4.80E-20 dispersed
Cmu09g1023 Cmu-Chr9:10316235 Cmu05g0647 Cmu-Chr5:5533543 9.20E-124 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75793 PF00069 Pkinase 1.50E-43 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1023 - - - 0.0