Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1042 ATGGACTGGACCAGAGGCCCTGCCGTCGGCCGCGGCTCCTCCGCCACCGTCTATTTGGCCACAGCCGCCTCCTCCGGCCACCAATTCGCCGTCAAATCCTCCAACCTCACTTCATCGGCGCTGTTGCAGAAGGAGCACGCTCTTCTTTCCAATTTGAGCTCCCCATATCTAATCAAGTGCTTAGGTTTCGACATTGAAACCGAAGCCTTGAATCCGCCGGTGTTCAATTTGTTCATGGAGTATTTGCCGGAGGGGACACTGTGGGATGCGATACAGAGCAACGGCGGTCGGATGGAGGAATCGACGATCGGAGTATTTTCGCGTCAGATTCTCAAAGGATTGGAGTACCTTCACGCTAATGGATTAGCACATTGCGATATCAAGAGCCGAAATCTGTTATTGAGTGATGAGGGTTTGAAAATCGCCGATCTCGGTTGTGCGAAATTTGTGGATGAAATTTCCGGTAATGGAGTTGGGGCTTTTTCTGGTTCGCCGGCGTTCATGGCGCCCGAGGTTGCGAGAGGTGAAGAACAGGGGTTTCCGGCGGATGTTTGGGCTTTTGGATGCACAGTCATTGAAATGGCTACTGGCGATCATCCATGGCCGGAAATGGAGGATCCGGTATCGGCGTTGTATCGGATTGGATTTTCCGGCGACTTACCGGAGATCCCGCGGTGGTTGTCGAAGGGTGCGAGGGATTTTGTCGCCAAGTGTTTGATAAAAGACCCGAAAGAAAGATGGACTGTGAAACGGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCTGAATCGGAGATTGAATGCTCGAGGATGAAAACGATGAATTCTTCTCCGAACTGTGTTTTGGATCAGAGCTTTTGGGATTCAATGGAAGATTTGGAGACTCCATTGAAGGTGACCCATCAAGCTTCTATGGCGGGTTGTCCGGCTGAGAGGATTAGAAGTTTGGCTGGTAATTTGTCTTCTGATTGGGATTTGGAATGGGATGATCGGGATTGGGTTTTGATCAGAAACAATGGCGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCAGATATTTTTGCCTCAGTTGAAGAAGAAGAAATTTTGAACTTGGAATTTGAAGAAAATTCTGTATTGTTCTGTTTAGTTGATAATGATTTTAGTGTTGTGAAGAGTGGGAATGGAGGATTAGAAATGGAATTTGAGAGTGATTTTATGTTGGAAACTGTGAGATCTGAAGTTGAAAATCGAACGCCGCTACGCCGGAGCTTTCTTCTTGGAGCAATTGCCCAATTCAAAGCTCCAAATCTCCGTCCACACTTCGCGGCTAGAGTTCGGGCCGGCAGTGTAGTTTCAGAGATTGTAATGGAAGCGCCGCCGTTCTCCATCGCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCAGTCTGTATTTCGATCACTTTCGTCGTTGTCTTATACCAGCTCCCTCATTTGTCTTCGCAACAATCGTTACAAAGGTCGTCATCTCAAAGTCAAGTGCTCCGGTAAGTTCGCAGTTCGTGCCTCATTTGGTGGTGACTCAGTTGTGACTTTACTGGATTACGGTGCTGGTAATGTTCGTAGTGTGAGGAATGCAATTCGTTACCTTGGCTTCGACATCAAAGATGTGCAAACTCCAGAAGACATTCTAAATGCAAAACGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCTGCCATGGATGTGCTGAACAGTAAAGGCATGGCTGAAGCACTTTGCACTTATATTGAGAATGATCGCCCATTTTTAGGCATCTGTCTTGGGCTTCAACTACTCTTTGAGTCAAGCGAGGAGAATGGACCAGTAAAAGGTCTTGGCTTAATACCTGGTGTGGTTGGACGTTTTGACTCTTCCAATGGCTTTAGGGTACCCCATATTGGGTGGAATGCTTTGGAAATCTCAGAGGACTCTGAGATATTGGATGAAATTTCTAACCGTCATGTCTACTTTGTTCACTCTTACCGTGCTATGCCATCAGACAAGAACAAGGATTGGATCTCTTCTACTTGCAGCTATGGTGACAGGTTTATAGCTTCAGTTAGAAGGGGAAATGTTCATGCAGTTCAATTCCACCCAGAAAAAAGTGGAGATGTAGGTCTGTCTGTCCTACGAAGATTCCTGTTTCCAAAGTTGTCTGTGACGAAGAAGCCTACTGAGGGAAAGGCATCAAGGCTTGCAAAAAGGGTAATTGCTTGTCTTGATGTGCGGACAAATGACCAAGGGGACCTTGTTGTTACCAAAGGGGACCAATATGATGTAAGGGAGCAGACAGAAGAGAATGAGGTGAGGAACCTTGGCAAGCCGGTAGAGCTTGCTGGACAGTACTACAAGGATGGTGCTGATGAGGTCAGTTTTCTGAATATAACCGGTTTCCGTGACTTCCCTCTTGGCGACTTGCCAATGTTGCAGGTGCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGGGGCGGGATTAGAGATTTTAAGGATGCAAATGGCAGACACTATTCTAGCTTGGAAGTTGCTTCAGAATATTTTAGATCTGGAGCTGATAAAATATCTATTGGAAGTGATGCAGTTTATGCTGCCGAAGAATATTTAAGAACTGGCGTAAAGACCGGAAAGAGCAGCTTGGAGCAGATTTCTAAGGTTTATGGAAACCAGGCTGTTGTGGTAAGTATTGATCCTCGTAGAGTGTACCTTAAAAGTCCCAATGATGTGGAGTTCAAAGTCATACGAGTAACAAACCCAGGTCCTAATGGAGAAGAGTATGCATGGTATCAATGTACAGTAAATGGAGGTCGAGAAGGTCGACCTATTGGCGCTTTTGAGCTTGCAAAAGCAGTTGAGGAGCTTGGAGCTGGAGAAATACTGCTGAACTGCATAGATTGTGATGGTCAAGGAAAAGGATTTGATACAGATTTGGTAAAGCTGATATCAGATTCTGTGAGCATACCCGTTATTGCCAGCAGTGGTGCTGGCTCTCCTCACCATTTCTCTGAGGTCTTTAACAAAACGAATGCATCTGCTGCCCTTGCCGCTGGCATTTTTCATCGCAAGGAGGTGCCTATTCAGTCCGTAAAAGAGCATTTATTAAAGGAAGGCATAGAAACAATGATGGAAATGAATATTGTGATGACTGATGTGAAGTAA 3195 45.73 MDWTRGPAVGRGSSATVYLATAASSGHQFAVKSSNLTSSALLQKEHALLSNLSSPYLIKCLGFDIETEALNPPVFNLFMEYLPEGTLWDAIQSNGGRMEESTIGVFSRQILKGLEYLHANGLAHCDIKSRNLLLSDEGLKIADLGCAKFVDEISGNGVGAFSGSPAFMAPEVARGEEQGFPADVWAFGCTVIEMATGDHPWPEMEDPVSALYRIGFSGDLPEIPRWLSKGARDFVAKCLIKDPKERWTVKRLLEHPFLQGFDSESEIECSRMKTMNSSPNCVLDQSFWDSMEDLETPLKVTHQASMAGCPAERIRSLAGNLSSDWDLEWDDRDWVLIRNNGVGGGSHGNGSVSSDIFASVEEEEILNLEFEENSVLFCLVDNDFSVVKSGNGGLEMEFESDFMLETVRSEVENRTPLRRSFLLGAIAQFKAPNLRPHFAARVRAGSVVSEIVMEAPPFSIAVSSSSSSSSSSSSSSSQSVFRSLSSLSYTSSLICLRNNRYKGRHLKVKCSGKFAVRASFGGDSVVTLLDYGAGNVRSVRNAIRYLGFDIKDVQTPEDILNAKRLIFPGVGAFAPAMDVLNSKGMAEALCTYIENDRPFLGICLGLQLLFESSEENGPVKGLGLIPGVVGRFDSSNGFRVPHIGWNALEISEDSEILDEISNRHVYFVHSYRAMPSDKNKDWISSTCSYGDRFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLFPKLSVTKKPTEGKASRLAKRVIACLDVRTNDQGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFKDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKSSLEQISKVYGNQAVVVSIDPRRVYLKSPNDVEFKVIRVTNPGPNGEEYAWYQCTVNGGREGRPIGAFELAKAVEELGAGEILLNCIDCDGQGKGFDTDLVKLISDSVSIPVIASSGAGSPHHFSEVFNKTNASAALAAGIFHRKEVPIQSVKEHLLKEGIETMMEMNIVMTDVK 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10509640 10531269 - CmPI595203_09g010420.1 Cmu09g1042 424271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1042 1064 NCBIfam imidazole glycerol phosphate synthase subunit HisF 742 1051 IPR004651 GO:0000105(InterPro)|GO:0000107(InterPro)
Cmu09g1042 1064 SMART serkin_6 3 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1042 1064 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 742 1054 IPR050064 GO:0000107(PANTHER)
Cmu09g1042 1064 Gene3D Aldolase class I 746 1056 IPR013785 -
Cmu09g1042 1064 Pfam Protein kinase domain 6 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1042 1064 NCBIfam imidazole glycerol phosphate synthase subunit HisH 526 724 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Cmu09g1042 1064 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 525 726 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Cmu09g1042 1064 FunFam Imidazole glycerol phosphate synthase hisHF 521 746 - -
Cmu09g1042 1064 Pfam Glutamine amidotransferase class-I 528 723 IPR017926 -
Cmu09g1042 1064 CDD GATase1_IGP_Synthase 526 724 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Cmu09g1042 1064 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1042 1064 CDD HisF 744 1048 IPR004651 GO:0000105(InterPro)|GO:0000107(InterPro)
Cmu09g1042 1064 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Cmu09g1042 1064 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Cmu09g1042 1064 SUPERFAMILY Ribulose-phoshate binding barrel 741 1053 IPR011060 -
Cmu09g1042 1064 Pfam Histidine biosynthesis protein 745 1036 IPR006062 GO:0000105(InterPro)
Cmu09g1042 1064 CDD STKc_MAPKKK 2 258 - -
Cmu09g1042 1064 SUPERFAMILY Protein kinase-like (PK-like) 3 259 IPR011009 -
Cmu09g1042 1064 Gene3D - 523 745 IPR029062 -
Cmu09g1042 1064 SUPERFAMILY Class I glutamine amidotransferase-like 525 725 IPR029062 -
Cmu09g1042 1064 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 525 733 - -
Cmu09g1042 1064 FunFam Imidazole glycerol phosphate synthase hisHF 744 1055 - -
Cmu09g1042 1064 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1638 Cmu-Chr1:30103459 Cmu09g1042 Cmu-Chr9:10509640 2.20E-62 dispersed
Cmu01g2125 Cmu-Chr1:34017387 Cmu09g1042 Cmu-Chr9:10509640 9.30E-82 dispersed
Cmu02g0901 Cmu-Chr2:11662217 Cmu09g1042 Cmu-Chr9:10509640 3.90E-82 dispersed
Cmu03g0686 Cmu-Chr3:1034221 Cmu09g1042 Cmu-Chr9:10509640 2.30E-54 dispersed
Cmu09g1042 Cmu-Chr9:10509640 Cmu10g1271 Cmu-Chr10:5626310 1.80E-11 dispersed
Cmu09g1042 Cmu-Chr9:10509640 Cmu02g0204 Cmu-Chr2:1987388 3.80E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75794 PF00977 His_biosynth 2.10E-44 CL0036 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1042 K01663 - csv:101205184 1102.81