Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1057 ATGATGATTACACGTGGACATGGGACACACGGTTTACCTTGTGGAGTTAGGGATTTTCAGTCCAATTTGCTCAGAGCCAAATTCCGTCGTTCTGATTTCCGATTCCGATTGATCGACGAACGTTGGTCGCCGGCGGTGGGGGATTTGTATCGTCTTCCATTTGAATTCAATCAATCCCCATACAATTCCACAGCCGCCCGCTTTTCCGAACGGGGCAATTTTCGGGGTGTTTGTTGGTTTGTTCCATGGTATCTGTTGATTTCAGGGTCAATGGCGTATACATTGGAATCGTGGACGAAGGAATACAATGAAGCTTTGAAACTGTCTGAAGATATCAATGGCATGATTTCTGAGAGAAGTTCACTTGCTGCATCTGGACCGGAAGCTCAGCGTCATGGCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAATCGCCGCAGGGACATGATTGCAAATTTGAGATCAAAAGCTAAGCAGATGGCTTCAACTTTGAACATGTCTAACTTTGCTAACCGGGATAGCTTACTTGGTCCAGAAATAAAGCCAGCTGATGTCATGAACAGAACAGAAGGCTTGGACAACCGAGGCCTAGTTGGTTTTCAACGACAAATTATGAGAGAGCAAGATGAAGGCCTTGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCATTAGCCGTCAATGAAGAACTTAACCTTCACACGAGACTTATTGATGATTTGGATGAACATGTCGATGTTACAGATTCCCGATTACGGCGAGTGCAGAAGAGGCTGGCAATACTGAACAAGCGGACCAAGGGTGGTTGCACTTGCATGTCAATGATTTTATCAGTTGTTGGGATTGTCGTTCTTATCGCTGTCATATGGCTACTGGTCAAGTATTTGTAA 972 44.44 MMITRGHGTHGLPCGVRDFQSNLLRAKFRRSDFRFRLIDERWSPAVGDLYRLPFEFNQSPYNSTAARFSERGNFRGVCWFVPWYLLISGSMAYTLESWTKEYNEALKLSEDINGMISERSSLAASGPEAQRHGSAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKAKQMASTLNMSNFANRDSLLGPEIKPADVMNRTEGLDNRGLVGFQRQIMREQDEGLEKLEGTIISTKHIALAVNEELNLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKRTKGGCTCMSMILSVVGIVVLIAVIWLLVKYL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10739672 10742218 + CmPI595203_09g010570.1 Cmu09g1057 424286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1057 323 Gene3D - 229 291 - -
Cmu09g1057 323 Pfam SNARE domain 264 314 IPR000727 -
Cmu09g1057 323 SMART tSNARE_6 222 289 IPR000727 -
Cmu09g1057 323 SUPERFAMILY SNARE fusion complex 218 289 - -
Cmu09g1057 323 CDD SNARE_Qc 230 287 - -
Cmu09g1057 323 PANTHER SYNTAXIN 100 309 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cmu09g1057 323 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Cmu09g1057 323 FunFam syntaxin-51 isoform X2 229 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1057 Cmu-Chr9:10739672 Cmu10g1294 Cmu-Chr10:5817646 4.70E-96 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1057 K08503 - csv:101208669 420.624