Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1064 ATGACAATCGACCACCACTCCGATCAAACCACCGATGATGATTCCCACCATCTCCATCCTACTCTTCCCACGCCAGTTGTCGCCAATGGCACCGACTGCGAGAATGCCGGAGATGACCTCTTCGTCCCTCCCCTGAACTTCGCTGTCGTTGACAACGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTCTTTCTTGCAGACGTTAGGCCTTCGTTCGATTATATGTCTTTGTCCCGAGCCATATCCTGAGGCCAACATGGATTTTCTCAAGTCCAATGGGATCCGATTGTTTCAATTTGGGATTGAAGGTTCTAAGGCTGGTTCAGACAAGGTTGATGCATATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATATGAGCGCTGATCAAATGTACTATTTGGAGCCTTTTGTGAACATTCCAGACTACACAATTCGTGAAGTACTTAAAGTTATTCTTGATGTGAGGAATCGCCCAGTTTTAATCCATTGCAAGCGAGGGAAGCACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGTTGCAGAAATGGTGCCTATCGTCAGTGTTTGATGAGTACCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATTGAACTATTCGACATTTCTGGCTTGAAGCATTTGCCACCATCATTTTCTTGTTCCGAAAGGTAA 702 46.44 MTIDHHSDQTTDDDSHHLHPTLPTPVVANGTDCENAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEANMDFLKSNGIRLFQFGIEGSKAGSDKVDAYVNLILECMRNLDMSADQMYYLEPFVNIPDYTIREVLKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKHLPPSFSCSER 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10864755 10867147 + CmPI595203_09g010640.1 Cmu09g1064 424293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1064 233 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 230 IPR020422 GO:0006470(InterPro)
Cmu09g1064 233 Pfam Tyrosine phosphatase family 42 221 IPR004861 -
Cmu09g1064 233 Gene3D Protein tyrosine phosphatase superfamily 40 220 IPR029021 -
Cmu09g1064 233 PRINTS Plant and fungal dual specificity phosphatase signature 41 58 IPR020428 GO:0016791(InterPro)
Cmu09g1064 233 PRINTS Plant and fungal dual specificity phosphatase signature 78 91 IPR020428 GO:0016791(InterPro)
Cmu09g1064 233 PRINTS Plant and fungal dual specificity phosphatase signature 97 111 IPR020428 GO:0016791(InterPro)
Cmu09g1064 233 PRINTS Plant and fungal dual specificity phosphatase signature 144 158 IPR020428 GO:0016791(InterPro)
Cmu09g1064 233 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 41 218 IPR029021 -
Cmu09g1064 233 MobiDBLite consensus disorder prediction 1 23 - -
Cmu09g1064 233 ProSitePatterns Tyrosine specific protein phosphatases active site. 166 176 IPR016130 GO:0016311(InterPro)
Cmu09g1064 233 PANTHER TYROSINE-PROTEIN PHOSPHATASE 24 227 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cmu09g1064 233 CDD PFA-DSP_Siw14 40 217 - -
Cmu09g1064 233 MobiDBLite consensus disorder prediction 1 19 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1064 K18045 - - csv:101209768 354.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1637 Cmu-Chr3:19133120 Cmu09g1064 Cmu-Chr9:10864755 2.30E-53 dispersed
Cmu02g1800 Cmu-Chr2:31878440 Cmu09g1064 Cmu-Chr9:10864755 5.10E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g1654 . 118 691 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.4e-191 665.2
Cmu02g0661 . 594 1164 Protein tyrosine phosphatase (PTP) family AT3G50110 58.0 3.0e-179 625.5
Cmu10g2292 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cmu06g1291 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cmu09g0990 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.1e-122 435.3
Cmu06g1874 . 16 911 Protein tyrosine phosphatase (PTP) family AT5G23720 65.2 0.0e+00 1089.3
Cmu06g0571 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.0e-42 169.1
Cmu09g1989 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cmu05g2202 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.1 6.2e-116 414.1
Cmu07g0539 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 7.5e-98 354.0
Cmu10g2178 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 73.1 7.2e-204 706.8
Cmu02g1800 . 93 294 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Cmu09g1064 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cmu10g1085 . 69 401 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.0e-101 365.5
Cmu11g0192 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Cmu11g0192 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Cmu10g1085 . 105 280 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.0e-43 171.0
Cmu02g1800 . 127 295 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Cmu09g1064 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.1e-70 260.8
Cmu03g1637 . 13 181 Protein tyrosine phosphatase (PTP) family AT4G03960 58.6 5.0e-56 214.5
Cmu03g1637 . 7 188 Protein tyrosine phosphatase (PTP) family AT3G02800 69.2 3.7e-70 261.5
Cmu02g1800 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cmu07g0350 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.5e-63 239.2
Cmu10g2292 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Cmu02g0661 . 560 1164 Protein tyrosine phosphatase (PTP) family AT3G19420 64.3 2.6e-220 761.9
Cmu01g1654 . 116 691 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 6.6e-200 694.1
Cmu01g1654 . 118 691 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.4e-191 665.2
Cmu02g0661 . 594 1164 Protein tyrosine phosphatase (PTP) family AT3G50110 58.0 3.0e-179 625.5
Cmu06g1291 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cmu02g2183 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.1e-69 258.8
Cmu10g1027 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 1.1e-110 396.7
Cmu04g0770 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.3e-286 982.2
Cmu04g0770 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-258 888.6
Cmu04g0770 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.0e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001007 2 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 7 6 2 83