Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1115 ATGTATGGGGATTGCCAAGTGATGACAAGCAATATGGGAGGAAATATGGTTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAATTTCAATTTCATGTCCAATTTTCAACATTTTCCTTCCGTTGTTCCTAAGGAAGAAAATGGGTTGATGATGAGAGGAAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAACAACTTGTTGAAGAAAATCAAGGAATCGAAATGGAAAGTAATAATAATAATGATATTATTCAGCAAAATCAAAAGAAAAAACGCTATCATAGACATACCGCTCGCCAGATCCAAGAAATGGAAGCATTATTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTAAAACTCAGCCAAGAACTTGGCCTTAAACCTCGCCAAGTCAAATTTTGGTTCCAAAATCGAAGAACCCAAATGAAGGCACAACAAGATAGATCTGATAATGTGATACTTAGGGCAGAAAATGAGAGCTTAAAGAATGAGAATTATAGATTGCAAACTGCCCTAAGAAACATCATATGCCCTAGCTGTGGAGGGCAGGGTATCCTAGGGGAACCAAGCTTGGATGAACAACAGCTTCGCCTTGAAAATGCAAGACTAAGAGATCAGTTGGAACAAGTTTGCTCCTTGACCACAAGATACACTGGGCGCCCAATCCAAGGGATGCCCTCCACAGCTCCTCTTATGCAACCATCTTTGGATTTGGACATGAACATATACTCAAGGCAATACACAGAGGCCATTGTTTCGTCATCTGAAATGATGTCATTGCCCTCGATGCTCCCACCCGAGACCGCCCACTTTCCAGAGGGTGGCCTATTAATTGAGGAGGAAAAAACACTTGCAATGGAGCTTGCTGTTTCATCCATAGCTGAGCTTGTGAAGATGTGTCGCTCGACCGAGCCTCTTTGGGTTCGAGACAGCGAGAGCGGTAAGGAAATTCTAAATGTAGAAGAGCATGGGAGAATGTTTCCATGGCCACTGAACCTCAAACAACACTTGATCAATGAGTTTAGGACCGAAGCCACTCGCGATACCGCCGTTGTTATAATGAATAGCATCACTCTCGTCGATGCCTTTCTCGATGCCAACAAATGGATGGAATTATTTCCTTCCATTGTGGCCAAAGCAAAGACTGTGCAAGTCATTTCATCAAGTGTTTCAGGCCATGCCACTTCTTCCCTTCAGCTGATGTATGCAGAACTTCAGACTCTTTCTCCTCTAGTTCCGACGAGAGAAGCGCATTTTCTCCGGTGCTGCCAACAGAACGCCGACGAAGGAAGCTGGACCGTCGTTGATTTTCCAATCGACAGCTTCCATGACAGTCTGCAGCATTCGTTTCCCAGATATAGGAGAAAGCCCTCTGGCTGCATTATTCAAGACATGCCCAATGGATATTCTAGGGTTACATGGGTGGAGCATGCAGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATAATTTTGTGCATAGTGGAATGGCTTTTGGGGCACATCGTTGGTTGGCTATCTTACAAAGACAGTGTGAGAGAATTGCAAGTCTTATGGCTAGAAATATTTCTGACCTTGGAGTAATACCTTCACCAGAAGCAAGACAGAACCTAATGAAACTCACACAAAGAATGATTAGAACTTTCTCAGTCAACATAAGCACATCAGGTGGGCAGTCGTGGACGGCGTTATCAGATTCTCCTGACGATACCGTTCGTATAACCACTCGAAAAGTCGTCGAGCCTGGCCAACCCAATGGGGTCATTCTTAGCGCTGTCTCGACCACTTGGCTTCCTTATCCTCACTATCGAGTCTTCGATCTTCTACGAGACGAACGACGTCGGTCTCAGCTGGAGGTTCTTTCCAATGGGAATTCCTTGCATGAGGTTGCTCACATTGCTAATGGCTCCCACCCTGGCAATTGCATCTCTCTTCTTCGTATCAATGTGGCCAGCAACTCCTCCCAGCATGTTGAGCTGATGCTGCAGGAGAGTTGCACTGACCAGTCCGGCAGTCTCGTCATCTACGCGACGATTGACGTCGATTCGATCCAGTTAGCAATGAGTGGAGAAGACCCCTCTTGCATTCCTCTCCTCCCCATAGGGTTTTCCATTGTCCCTGCCATCGGGTCAACCGTCGGCGGACACCCAGCACCGCCACCCGAGGACGGTACCACGAATGCCAACTCCAGCTGCCTCCTTACCGTTGGTTTGCAAGTTCTAGCCAGCACCATCCCGTCGGCGAAGCTCAACTTATCAAGTGTTACTGCCATCAACAACCACCTCTGTAATACGGTGCACCAGATCAACATCGCTCTCGGCAGCCCAGGTCGTCTTGAGAACGGCAATAACGTGGCCGAGCCGAATAATGCACCAACGCCGCCGCCACCGCCGCCCAAGCAATAA 2421 46.76 MYGDCQVMTSNMGGNMVSSESLFSSPIQNPNFNFMSNFQHFPSVVPKEENGLMMRGKEDMESGSGSEQLVEENQGIEMESNNNNDIIQQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSLTTRYTGRPIQGMPSTAPLMQPSLDLDMNIYSRQYTEAIVSSSEMMSLPSMLPPETAHFPEGGLLIEEEKTLAMELAVSSIAELVKMCRSTEPLWVRDSESGKEILNVEEHGRMFPWPLNLKQHLINEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVAKAKTVQVISSSVSGHATSSLQLMYAELQTLSPLVPTREAHFLRCCQQNADEGSWTVVDFPIDSFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNNFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLTQRMIRTFSVNISTSGGQSWTALSDSPDDTVRITTRKVVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVIYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPAIGSTVGGHPAPPPEDGTTNANSSCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINIALGSPGRLENGNNVAEPNNAPTPPPPPPKQ 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11577959 11585823 - CmPI595203_09g011150.1 Cmu09g1115 424344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1115 806 ProSiteProfiles START domain profile. 283 522 IPR002913 GO:0008289(InterPro)
Cmu09g1115 806 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 83 778 IPR042160 -
Cmu09g1115 806 Gene3D - 78 161 - -
Cmu09g1115 806 Gene3D - 329 517 IPR023393 -
Cmu09g1115 806 CDD START_ArGLABRA2_like 287 518 - -
Cmu09g1115 806 SMART START_1 292 519 IPR002913 GO:0008289(InterPro)
Cmu09g1115 806 SUPERFAMILY Homeodomain-like 81 151 IPR009057 -
Cmu09g1115 806 SMART HOX_1 91 154 IPR001356 GO:0003677(InterPro)
Cmu09g1115 806 Pfam START domain 293 519 IPR002913 GO:0008289(InterPro)
Cmu09g1115 806 MobiDBLite consensus disorder prediction 785 806 - -
Cmu09g1115 806 CDD homeodomain 93 151 IPR001356 GO:0003677(InterPro)
Cmu09g1115 806 SUPERFAMILY Bet v1-like 285 521 - -
Cmu09g1115 806 Coils Coil 149 169 - -
Cmu09g1115 806 FunFam Homeobox-leucine zipper protein HDG1 79 166 - -
Cmu09g1115 806 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu09g1115 806 Pfam Homeodomain 93 148 IPR001356 GO:0003677(InterPro)
Cmu09g1115 806 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677(InterPro)
Cmu09g1115 806 SUPERFAMILY Bet v1-like 558 774 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0200 Cmu-Chr5:1686371 Cmu09g1115 Cmu-Chr9:11577959 9.60E-145 dispersed
Cmu05g0894 Cmu-Chr5:8130458 Cmu09g1115 Cmu-Chr9:11577959 3.60E-150 dispersed
Cmu05g1171 Cmu-Chr5:11470375 Cmu09g1115 Cmu-Chr9:11577959 1.20E-143 dispersed
Cmu07g1290 Cmu-Chr7:28178418 Cmu09g1115 Cmu-Chr9:11577959 3.50E-121 dispersed
Cmu09g0186 Cmu-Chr9:2022799 Cmu09g1115 Cmu-Chr9:11577959 2.00E-110 dispersed
Cmu09g1115 Cmu-Chr9:11577959 Cmu10g1087 Cmu-Chr10:3100103 5.40E-08 dispersed
Cmu09g1115 Cmu-Chr9:11577959 Cmu06g0005 Cmu-Chr6:97544 5.00E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6847 PF01852 START 6.40E-43 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1115 - - - 0.0