Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1121 ATGAGAAACCATGGGAATACAGTTTCATATGATCATGAAGAAGAAAATGAAGATGAAGTTAGTATGAAGAAGAGGAAGAATGATGAAGAAGAAGAAGAAGATGATGGGAAGAAGAAGAAGAAGAAGAAGAAAGAGCAGCAAAATAAAGTTGCTTTTTATAAACTCTTTGCTTTTGCTGATTTTTATGATTATTTTCTCATGAGTTTTGGTTCTATTGGAGCTTGTATCCATGGTGCTTCTGTTCCTGTCTTCTTCATTTTCTTTGGAAAACTCATTAATATCATTGGCATGGCTTATCTTTTCCCTGAAGATGCTGCTCCCAAAGTTGCTAAGTACTCTTTGGATTTTCTATATCTCAGTGTGGTTATACTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCATAGTGGAGAGAGGCAAGCAGCAAAGATGAGAATGGCTTATTTAAAATCAATGTTAAATCAAGACATTAGCCTTTTTGACACTGAAGCTTCAACTGGTGAAGTCATTGCTGCTATTACTAGTGACATTGTTATTGTTCAAGATGCCATTTCTGAGAAAGTAGGGAACTTTTTGCATTATATAAGCCGGTTTATATCAGGGTTTATTATCGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACATTATCTATTGTCCCTTTGATTGCCCTTGCTGGTGGTCTCTATGCATTTGTCACCATTGGTCTTATTGCCAAAGTAAGAAAATCTTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTTTAGGAAATGTAAGAACAGTTCAAGCCTTTGCTGGGGAAGAAAGAGCAGTAAATTTATACAAAGGAGCTCTCAAGAATACCTACAAGTATGGTAGAAAAGCAGGGCTGGCTAAGGGACTGGGCCTGGGATCAATGCATTGTGTCCTTTTCTTGTCATGGGCTCTGCTAGTTTGGTTTACCAGCATTGTTGTCCACAAGGGCATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCTTGTCACTTGGGCAGGCCGCACCAGACATTTCTGCCTTTGTTCGAGCAAAGGCAGCGGCATATCCTATTTTTCAGATGATAGAGAGGAACACAGTTAGCAAAAGCAGCTCCAAAACTGGCCGGAAACTGAATAAGCTTGATGGTCATATTCAATTCAAGGATGTTAATTTCAGCTACCCATCTCGTTTGGATGTAATTATATTTAATAAGTTATCTCTTGATATTCCTGCGGGCAAGATTGTAGCTCTTGTGGGAGGAAGTGGATCAGGAAAGAGCACAGTGATATCTTTGATTGAACGATTCTATGAACCCCTTTCTGGAGAGATTCTATTGGATGGTAATAACATCAAGGAGCTGGATCTCAAGTGGCTAAGGCAGCAAATTGGTTTGGTCAATCAAGAGCCTGCCCTCTTTGCTACAAGCATTAGGGAGAACATTCTATATGGAAAAGATGATGCTACCCTTGAGGACATAACGCGTGCAGCCAAACTTTCTGAGGCTTTATCATTTATAAACAATCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAATTATCAGGGGGACAAAAACAAAGGATTGCAATATCTCGTGCAATCGTTAAAAATCCATCAATCTTGTTGCTGGATGAGGCAACAAGTGCACTAGATGCAGAATCTGAAAAGAGTGTACAAGAGGCACTCGATCGCGTCATGGTTGGTCGAACGACTGTAGTGGTGGCTCATCGTTTATCTACCATACGGAATGCAGATGTGATTGCTGTCGTTCAAGAAGGAAAGATAGTTGAAACCGGAAGCCATGATGAGCTCATTTCAAAGCCGGACAGTGTCTATGCATCACTTGTCCAGTTCCAAGAAACATCATCTCTGCAACACCATCCCTCGATTGGGCAGTTGGGTCGACCACCTAGTATAAAGTACTCTCGAGAATTATCTCGCACTACAACGAGCTTTGGTGCAAGTTTTCGCTCCGAGAAAGAATCTCTTGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCAAAGCATGTTTCAGCAAGAAGACTTTACTCCATGGTTGGACCGGATTGGATGTATGGCATTGTTGGCGTCATTGGAGCATTCGTTACAGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCATTTTACATGGACTGGAATACAACTCAACATGAGATCAAGAAAATTTCATTGCTTTTCTGTGGCGGTGCGGTTTTAACTGTCATTTTTCATGCAGTTGAGCATCTTTGTTTTGGAATTATGGGAGAGCGACTTACTCTTCGAGTTCGAGAAAAGATGTTCCATGCTATTCTGAGAAACGAGATAGGATGGTTCGATGATATGAACAACACAAGTTCTATGCTTTCATCGCGTCTAGAAACTGATGCAACTTTATTACGAACTATTGTTGTCGACCGCTCTACAATTCTTCTGCAGAATCTAGCTTTGGTCGTTGCATCGTTCATCATTGCTTTCATTTTGAATTGGAGAATCACTCTAGTTGTCCTGGCCACTTATCCATTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTACGGTGGAAATTTGAGCAAAGCATACCTGAAAGCCAATACACTGGCCGGTGAGGCAGTTGGCAACATTAGGACTGTTGCTGCATTTTGTTCTGAGCAGAAGGTTCTTGATCTATATGCTAAGGAGCTCGTTGAGCCCTCGAGACGTTCGCTTAAACGTGGACAGATTGCTGGAATATTTTATGGTGTCTCCCAGTTCTTCATCTTTTCATCTTACGGTCTGGCCTTGTGGTACGGTTCGGTCTTGATGGGACAGGGGCTTGCTAGCTTCAAATCTGTTATGAAATCATTCATGGTTTTGATAGTAACTGCCTTAGCAATGGGTGAAACTTTGGCATTGGCCCCTGATCTTTTAAAGGGAAACCAGATGGTGGCATCCGTGCTTGAGGTGATGGATCGACAGACAGAGGTGTCGGGTGATGTTGGTGAAGAGCTAAATGTGGTGGAGGGTACCATTGAGCTGAGGAGTGTTGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTTAAAGTGAGAGCAGGCAAGAGTATAGCCTTAGTTGGGCAAAGCGGTTCGGGGAAAAGCTCGGTTCTAGCTCTTATTCTGCGATTTTACGATCCAATTGCTGGGAAGGTGATGATTGATGGGAAAGATATTAAAAAACTGAAGCTCAAATCTCTCAGAAAGCACATCGGCCTCGTCCAACAGGAACCGGCTCTTTTTGCCACGTCAATTTACGAGAACATTCTTTATGGGAAAGAAGGAGCTTCAGAAGCCGAAGTATTCGAAGCAGCGAAACTCGCCAATGCTCATAACTTCATCAGTGCTCTTCCTGAAGGCTACTCAACAAAAGTTGGGGAAAGAGGGATCCAACTTTCGGGTGGCCAACGACAGAGGATCGCCATTGCAAGAGCAGTCCTGAAGAACCCGGAAATACTACTACTAGACGAAGCTACGAGTGCTCTCGATGTCGAATCGGAACGTGTGGTTCAGCAAGCCTTAGACAGATTGATGATGAACAGAACAACTGTGGTGGTTGCACATAGGCTTTCTACCATTAAAAACTGTGACCAAATCTCAGTGATTCAAGATGGGAAGATTGTAGAACAAGGAACTCATTCAAGCCTTTCCGACAACAAAAATGGAGCTTATTACAAGTTAATCAACATCCAACAACAGCAACAAAGACAGTGA 3810 42.44 MRNHGNTVSYDHEEENEDEVSMKKRKNDEEEEEDDGKKKKKKKKEQQNKVAFYKLFAFADFYDYFLMSFGSIGACIHGASVPVFFIFFGKLINIIGMAYLFPEDAAPKVAKYSLDFLYLSVVILFSSWAEVACWMHSGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVIAAITSDIVIVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEERAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKGIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKTGRKLNKLDGHIQFKDVNFSYPSRLDVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISKPDSVYASLVQFQETSSLQHHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPKHVSARRLYSMVGPDWMYGIVGVIGAFVTGSQMPLFALGVSQALVAFYMDWNTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREKMFHAILRNEIGWFDDMNNTSSMLSSRLETDATLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEQKVLDLYAKELVEPSRRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVLEVMDRQTEVSGDVGEELNVVEGTIELRSVEFSYPSRPDVLIFKDFNLKVRAGKSIALVGQSGSGKSSVLALILRFYDPIAGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAAKLANAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMMNRTTVVVAHRLSTIKNCDQISVIQDGKIVEQGTHSSLSDNKNGAYYKLINIQQQQQRQ 1269
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 11670637 11679332 + CmPI595203_09g011210.1 Cmu09g1121 424350
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1121 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 391 627 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1121 1269 Pfam ABC transporter 410 558 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1121 1269 FunFam ABC transporter B family member 19 381 630 - -
Cmu09g1121 1269 CDD ABC_6TM_Pgp_ABCB1_D2_like 695 1010 - -
Cmu09g1121 1269 Gene3D - 389 642 IPR027417 -
Cmu09g1121 1269 Pfam ABC transporter transmembrane region 72 339 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu09g1121 1269 Pfam ABC transporter transmembrane region 706 977 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu09g1121 1269 ProSitePatterns ABC transporters family signature. 530 544 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1121 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 629 IPR027417 -
Cmu09g1121 1269 SUPERFAMILY ABC transporter transmembrane region 684 1006 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu09g1121 1269 Gene3D - 1016 1269 IPR027417 -
Cmu09g1121 1269 Gene3D ABC transporter type 1, transmembrane domain 9 100 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu09g1121 1269 SMART AAA_5 418 610 IPR003593 GO:0016887(InterPro)
Cmu09g1121 1269 SMART AAA_5 1052 1224 IPR003593 GO:0016887(InterPro)
Cmu09g1121 1269 FunFam ABC transporter B family member 4 1015 1268 - -
Cmu09g1121 1269 CDD ABC_MTABC3_MDL1_MDL2 391 629 - -
Cmu09g1121 1269 MobiDBLite consensus disorder prediction 1 41 - -
Cmu09g1121 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 69 356 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu09g1121 1269 CDD ABC_MTABC3_MDL1_MDL2 1025 1260 - -
Cmu09g1121 1269 Gene3D ABC transporter type 1, transmembrane domain 116 998 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu09g1121 1269 Pfam ABC transporter 1044 1192 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1121 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 706 992 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu09g1121 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1025 1261 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1121 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1019 1263 IPR027417 -
Cmu09g1121 1269 CDD ABC_6TM_Pgp_ABCB1_D1_like 67 364 - -
Cmu09g1121 1269 Coils Coil 12 49 - -
Cmu09g1121 1269 SUPERFAMILY ABC transporter transmembrane region 55 361 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu09g1121 1269 ProSitePatterns ABC transporters family signature. 1164 1178 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1121 1269 PANTHER ABC TRANSPORTER B FAMILY 12 652 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0117 Cmu-Chr6:1090159 Cmu09g1121 Cmu-Chr9:11670637 1.00E-12 dispersed
Cmu06g1454 Cmu-Chr6:25784123 Cmu09g1121 Cmu-Chr9:11670637 4.10E-32 dispersed
Cmu09g1121 Cmu-Chr9:11670637 Cmu09g1757 Cmu-Chr9:33620856 0.00E+00 dispersed
Cmu09g1121 Cmu-Chr9:11670637 Cmu10g2730 Cmu-Chr10:33994906 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1121 K05658 - csv:101219304 2263.42