Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1128 ATGAGTCTTGATGCTCTTTCTTCCAATGACTTGTTCAACTTCATCATCTACGACACGATCTCCGCAACACCGAACACCGAACACGCCCTCCGCGACTCATCGGAGAATACATTTCTCTCCGTCGACAAGTGTTCGAAACCCTACTCAAGAAAACGCCGTCCGAGTGAGGGAGACAGCAACCGAGCGACACCGTCATCAACAACGACGACGCAACAAGGGAAGAAGAAAAGGAAGAGAAAAGCAAAGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGTAAACAAATGAATGAACATCTTTCGGTCTTACGTTCCCTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGTGGTGCAGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTAGAAGCCAAGAAGCTACAAATCTTACAACAAGAAGTAGATCATCATCAAGAACAAGAGATTAATGAAGATTCAAGAATGAGAATGAATGATAATAATAGTAATAAGTTGTTTTCATTTGCAAGTTTGTTGATGCATAATTCAGATCAAAATAACTATTGCTCCCAATACTCAACCAAATACACATCAAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCAAACCTTAGAATCCTCTCAACAAGAAGCCATAGACAACTCTTGAAGCTCATTGCTGGCTTGCAAGCTCTTCGTCTCACTATTCTTCATCTCAATCTCACTGATTTCCACCCATTGGTTCTTTACTCCATTAGCCTCAAGGTTGAAGAAGGATGCCAACTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAGCTGTTTTGTGTTAA 924 41.45 MSLDALSSNDLFNFIIYDTISATPNTEHALRDSSENTFLSVDKCSKPYSRKRRPSEGDSNRATPSSTTTTQQGKKKRKRKAKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQILQQEVDHHQEQEINEDSRMRMNDNNSNKLFSFASLLMHNSDQNNYCSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLNLTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11802742 11805370 - CmPI595203_09g011280.1 Cmu09g1128 424357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1128 307 Gene3D - 82 174 IPR036638 GO:0046983(InterPro)
Cmu09g1128 307 Pfam Helix-loop-helix DNA-binding domain 93 144 IPR011598 GO:0046983(InterPro)
Cmu09g1128 307 SMART finulus 98 149 IPR011598 GO:0046983(InterPro)
Cmu09g1128 307 MobiDBLite consensus disorder prediction 41 91 - -
Cmu09g1128 307 PANTHER MAX DIMERIZATION, MAD 54 299 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu09g1128 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 143 IPR011598 GO:0046983(InterPro)
Cmu09g1128 307 Coils Coil 140 160 - -
Cmu09g1128 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 160 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2268 Cmu-Chr3:31353262 Cmu09g1128 Cmu-Chr9:11802742 1.90E-39 dispersed
Cmu05g0361 Cmu-Chr5:3070903 Cmu09g1128 Cmu-Chr9:11802742 1.80E-35 dispersed
Cmu05g0979 Cmu-Chr5:8952869 Cmu09g1128 Cmu-Chr9:11802742 1.20E-21 dispersed
Cmu09g1128 Cmu-Chr9:11802742 Cmu08g1073 Cmu-Chr8:23002440 3.80E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6849 PF00010 HLH 1.00E-10 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1128 - - - 0.0