Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1132 ATGCCGAGTCAAGCACATTACATGCCATTAACGACGATGTTGATAGTTAGTCCATTGACTATCAAAGTCATGATCCTGATCCTCACGAGCATGAGCCACACAGTCACCAAGTATTTGAGGCTACTACTCATGCTTCTGAGAATGAGAATCCCGAGCACACCGTTGAGGAGCCCATCGCTGAGGGATGAGTGTCACCCCACCATGAGTCAACGACCGCAAGGGGTGGGGGCATCTGTAGCACCCTTCATGAGATATAGCTTAGGGGTGAACGACGCGAGCTTTACCTTCTTTTTTGCGTACAAAGTGACGCACGAAGCGAAACCCACACAACCTCCTTCGGCAACCGCGACCACAGCGCCGACGACCTCCTTGCGGGCAAACCGGACGTGCGACCACGAACTCCAACCGACGTCCACGACCTCCGTGGGGATTGTAAAGAATCCGCAGATTTGGAGTAATTTCGGAACTGTTCGGACACTTTTCAGCAAGGATCCCAGTCTGCCTTGTTACCATCGCCACCAGTCAATGCTCATTCCTACTGCTGTCAATGCCCTCAAATCCTCAAGGTCAATATCTTGGTTGCCGACTGGTAGGCTTCAACAAACCTTGGCGAGATGTCTGGAGCTGAGTGGGATATCTCTGCATTCGGGGAAGGTTTCGAAAGTGAAATTATGTCCGGAATTTGCAGGTCGAGGGAGGTATTTTGATTTCAAGTCCAACTTCATTCCTGCCTCAATCAATTATGCCGAAGAGTCGCCTCTTTGTACCACACTTTCTAAGGATGGGTTCAAAATTCGAACTGTTGAGCATTTGCTTTCTGCCATGGAGGCTATGGGGGTTGACAATTGTAGGATCGAGATAGCGAATGAAGATGATAAAGATAGTGAAGTGGAGGTTCCAATTTTTGATGGATCTGCGGGTAAATGGGTGGATGCAATAGAGGAGATTGGTCTTAAGTTGGCTATAGACCAGTGTGGCAACTGCTGTGAGAAAATGGCACCATATGTAAATCAACCTGTCCATGTGTGGAGGAATGACTGTTATCTTGTTGCTTTTCCAGCCTCAGCAGTTTGTATCACTTATGGAATTGACTTTCCTCAGGTGCCTGACATTGGCCGCCAATGGTTTTCTACTGCCCCTTTGGACAACATGTTCTATGCCGAGCAAATAGCTCCATCAAGAACCTTTTGCATTTATGAGGAGGTAGAGCAAATGCGTAATATGGGACTCATAAAAGGAGGCTCCATAGAAAATGCTTTAGTTTGCAGTGTCAGCAAAGGTTGGATCAATCCCCCATTGCGTTTCCATGATGAACCTTGTCGCCACAAGGTTTTAGATTTAATTGGGGATCTGTCACTTTTTGCACAGTTGGGCAGTCAAGGGATTCCGGTGGCACACATAGTGGTTTACAAG 1413 47.56 MPSQAHYMPLTTMLIVSPLTIKVMILILTSMSHTVTKYLRLLLMLLRMRIPSTPLRSPSLRDECHPTMSQRPQGVGASVAPFMRYSLGVNDASFTFFFAYKVTHEAKPTQPPSATATTAPTTSLRANRTCDHELQPTSTTSVGIVKNPQIWSNFGTVRTLFSKDPSLPCYHRHQSMLIPTAVNALKSSRSISWLPTGRLQQTLARCLELSGISLHSGKVSKVKLCPEFAGRGRYFDFKSNFIPASINYAEESPLCTTLSKDGFKIRTVEHLLSAMEAMGVDNCRIEIANEDDKDSEVEVPIFDGSAGKWVDAIEEIGLKLAIDQCGNCCEKMAPYVNQPVHVWRNDCYLVAFPASAVCITYGIDFPQVPDIGRQWFSTAPLDNMFYAEQIAPSRTFCIYEEVEQMRNMGLIKGGSIENALVCSVSKGWINPPLRFHDEPCRHKVLDLIGDLSLFAQLGSQGIPVAHIVVYK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11881638 11898086 - CmPI595203_09g011320.1 Cmu09g1132 424361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1132 471 SUPERFAMILY Ribosomal protein S5 domain 2-like 199 318 IPR020568 -
Cmu09g1132 471 Gene3D lpxc deacetylase, domain 1 198 323 IPR015870 GO:0008759(InterPro)|GO:0009245(InterPro)
Cmu09g1132 471 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 177 471 IPR004463 GO:0008759(InterPro)|GO:0009245(InterPro)
Cmu09g1132 471 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 200 455 IPR004463 GO:0008759(InterPro)|GO:0009245(InterPro)
Cmu09g1132 471 SUPERFAMILY Ribosomal protein S5 domain 2-like 338 455 IPR020568 -
Cmu09g1132 471 Gene3D lpxc deacetylase, domain 2 335 471 IPR011334 GO:0008759(InterPro)|GO:0009245(InterPro)
Cmu09g1132 471 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 200 467 IPR004463 GO:0008759(InterPro)|GO:0009245(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0168 Cmu-Chr4:3530466 Cmu09g1132 Cmu-Chr9:11881638 2.30E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1132 K02535 - csv:101205101 558.525