Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1156 ATGGCTGGTCTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGGCCTAATTTCAACCTTCACCACCATCATCAGAACCACCACCATCCCGACTCTCAATCTGGTCATGATGATGAATCCCATCCTCCGTCAGAATTTGTCACCGCCGCAGACTCTACCGCACCTGCCACAGATATGGTGGCCTCTCGCCGACCACGCGGCCGTCCACCCGGTTCCAAAAACAAACCGAAGCCACCGGTCATCATAACCCGAGAAAGCGCCAATACCCTAAGGGCTCATATTCTTGAGGTTGGTAATGGCTGTGACGTCTTCGATAGCATCGCTACCTATGCTCGTCGTCGCCAGCGAGGGATCTGCATCTTGAGCGGTAGTGGAATGGTAATGAATGTCAACTTACGGCAACCGACGGCGACGGGGTCTGTGTTAACCCTACATGGAAGGTTTGAGATATTATCCCTTACTGGATCTTTCTTGCCGCCGCCTGCTCCTCCCGGCGCTACTAGTTTGACTATATACTTAGCCGGTGGGCAAGGGCAAGTGGTCGGTGGAAACGTTGTTGGGGAATTGGTGGCGGCAGGGCCAGTTACAATCATCGCGGCATCATTTACAAATGTAGCGTATGAGAGATTGCCACTAGAAGAACAAGAGCAAGAACAAGAACAAGAGCAAGATCAACTTCAGATGCAGCCACCAACGTCTCAGGGCGGCAGTAGCGGTGGAAACAATAACAACCCATTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAACCAAATTCAGCTACCATTTTGA 816 50.37 MAGLDLGNRYIHQLQRPNFNLHHHHQNHHHPDSQSGHDDESHPPSEFVTAADSTAPATDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDSIATYARRRQRGICILSGSGMVMNVNLRQPTATGSVLTLHGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTIIAASFTNVAYERLPLEEQEQEQEQEQDQLQMQPPTSQGGSSGGNNNNPFPDPSSGLPFFNLPLNMQNQIQLPF 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12476026 12476841 - CmPI595203_09g011560.1 Cmu09g1156 424385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1156 271 CDD DUF296 92 175 IPR005175 -
Cmu09g1156 271 ProSiteProfiles PPC domain profile profile. 88 224 IPR005175 -
Cmu09g1156 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 263 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu09g1156 271 Gene3D - 91 226 - -
Cmu09g1156 271 MobiDBLite consensus disorder prediction 215 258 - -
Cmu09g1156 271 MobiDBLite consensus disorder prediction 22 81 - -
Cmu09g1156 271 PIRSF ESCAROLA 7 269 IPR014476 GO:0003680(InterPro)
Cmu09g1156 271 MobiDBLite consensus disorder prediction 31 45 - -
Cmu09g1156 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 204 IPR005175 -
Cmu09g1156 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 217 - -
Cmu09g1156 271 MobiDBLite consensus disorder prediction 223 258 - -
Cmu09g1156 271 FunFam AT-hook motif nuclear-localized protein 91 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0032 Cmu-Chr6:337616 Cmu09g1156 Cmu-Chr9:12476026 4.70E-60 dispersed
Cmu07g0391 Cmu-Chr7:3988582 Cmu09g1156 Cmu-Chr9:12476026 7.40E-58 dispersed
Cmu08g1111 Cmu-Chr8:23471221 Cmu09g1156 Cmu-Chr9:12476026 2.00E-45 dispersed
Cmu09g1156 Cmu-Chr9:12476026 Cmu11g0675 Cmu-Chr11:7436826 8.60E-51 dispersed
Cmu10g1022 Cmu-Chr10:2183337 Cmu09g1156 Cmu-Chr9:12476026 1.30E-80 wgd
Cmu05g0282 Cmu-Chr5:2403443 Cmu09g1156 Cmu-Chr9:12476026 1.50E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1156 - - - 0.0